View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1725_low_2 (Length: 423)
Name: NF1725_low_2
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1725_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 416
Target Start/End: Original strand, 37571425 - 37571828
Alignment:
| Q |
13 |
acatcatcaaagcagacgggaggactaaaaaattcattaaatatataataaagggactaaaaagttggttttaaaactagggggctataacttctcaaag |
112 |
Q |
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| T |
37571425 |
acatcaccaaaacagacaggaggactaaaaaatccattaaatatataatagagggactaaaaagttggttttaaaactagggggctaaaacttctcaaag |
37571524 |
T |
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| Q |
113 |
taaaatagaaggatcaaaactatatttaagtttaaaattaaatttcgaaagttccactcataggatcatcttcatttgctaaaaaatgagttcaaggcaa |
212 |
Q |
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| T |
37571525 |
taaaataggaggatcaaaactacatttaagtttaaaat-aaatttcgacagttctactcataggatcatcttgatttgctaaaaaatgagttcaaggcaa |
37571623 |
T |
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| Q |
213 |
aacaatttaaaataattaaacttgtataatatgaaatttaatagaataattttcatgat--acacaaatatagaagggaaaataatcattttacaatgtg |
310 |
Q |
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| T |
37571624 |
aacaatttaaaataattaaacttgtataatatgaaatttaatagaataatcttcatgatacacacaaatatagaagggaaaataatcattttacaatatg |
37571723 |
T |
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| Q |
311 |
gagaccagaattacgattttatttttatgttaacccttcaaaccttcaatttttaaaaattgaaatctttgtattttggagttcgaccatgagataagta |
410 |
Q |
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|||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37571724 |
gagatcaaaattacgatttta-ttttatgttaacccttcaaaccttcaatttttaaaaattgaaatctttgtatcttggagttcgaccatgagataagta |
37571822 |
T |
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| Q |
411 |
ttatct |
416 |
Q |
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| T |
37571823 |
taatct |
37571828 |
T |
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