View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1725_low_3 (Length: 417)
Name: NF1725_low_3
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1725_low_3 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 72 - 304
Target Start/End: Complemental strand, 27664616 - 27664384
Alignment:
| Q |
72 |
aatgttctcaacaaaaacaattgagcatgcaatttaagaactcactgaatattcaatcacggagtgaatcaaaatattgcatcgttcccaagctttgcga |
171 |
Q |
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| T |
27664616 |
aatgttctaaacaaaaacaattgagcgtgcaatttaagaactcactgaatattcaatcacggagtgaatcaaaatattgcatcgttcccaagctttgcga |
27664517 |
T |
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| Q |
172 |
cttggatcatgaagtacatgagctggaatacttcgatcaacgaactgaaacatgttctcagcacttaaagcacgacacatcgtttgatcccaagcaagat |
271 |
Q |
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| T |
27664516 |
cttggatcatgaagtacatgaactggaatacttcgatcaacgaactgaaacatgttcttagcacttaatgcacgacacatcgtttgatcccaagcaagat |
27664417 |
T |
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| Q |
272 |
agttgcttccatccaaaggagatgtgaccggaa |
304 |
Q |
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| T |
27664416 |
agttgcttccatccaaaggagatgtgaccggaa |
27664384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 136 - 288
Target Start/End: Complemental strand, 4261251 - 4261099
Alignment:
| Q |
136 |
tgaatcaaaatattgcatcgttcccaagctttgcgacttggatcatgaagtacatgagctggaatacttcgatcaacgaactgaaacatgttctcagcac |
235 |
Q |
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| T |
4261251 |
tgaatcaagttattacatcgttcccaagcctaacgatttggatcgagaagtgcaagaactggaatgcttccatcaacgaactgaaacttgttcttagcac |
4261152 |
T |
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| Q |
236 |
ttaaagcacgacacatcgtttgatcccaagcaagatagttgcttccatccaaa |
288 |
Q |
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| T |
4261151 |
ctaaagcatgacgaatcgctcgagcccaagcaagaaagttttttccatccaaa |
4261099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 195 - 340
Target Start/End: Complemental strand, 1194585 - 1194441
Alignment:
| Q |
195 |
tggaatacttcgatcaacgaactgaaacatgttctcagcacttaaagcacgacacatcgtttgatcccaagcaagatagttgcttccatccaaaggagat |
294 |
Q |
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| T |
1194585 |
tggaatacttccatcaacaaattgaaacttgttcttagcccctaaagcacgacgaatggctcaagcccaagaaagatagttgcttttatctaaaattggt |
1194486 |
T |
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| Q |
295 |
gtgaccggaacagaatttggtccatcactaggatgaacatagtact |
340 |
Q |
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| T |
1194485 |
gtaacct-aacaaaattaggtccatcactaggatgaacatagtact |
1194441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 133 - 362
Target Start/End: Complemental strand, 37245972 - 37245736
Alignment:
| Q |
133 |
gagtgaatcaaaatattgcatcgttcccaagctttgcgacttgga-------tcatgaagtacatgagctggaatacttcgatcaacgaactgaaacatg |
225 |
Q |
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| T |
37245972 |
gagtgaatcaaaatattgcatcgttcccaagcttgacgatttggaatttggatcaagacgcacaagaactataatgcttccatcaacgaacttaaacttg |
37245873 |
T |
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| Q |
226 |
ttctcagcacttaaagcacgacacatcgtttgatcccaagcaagatagttgcttccatccaaaggagatgtgaccggaacagaatttggtccatcactag |
325 |
Q |
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| T |
37245872 |
ttcttagaacctaaagcacaacgcattgcttgagcccaagcaaggttgttgcttccatccaagagaggtgtaaccgtaacagaattaggtccatcactag |
37245773 |
T |
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| Q |
326 |
gatgaacatagtactatggggtagtactatgtgaagg |
362 |
Q |
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| T |
37245772 |
aataaacatagtactatgaggtagtactctgtgaagg |
37245736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 5508 - 5548
Alignment:
| Q |
298 |
accggaacagaatttggtccatcactaggatgaacatagta |
338 |
Q |
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| T |
5508 |
accgtaaccgaatttggtccttcactaggatgaacatagta |
5548 |
T |
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