View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1725_low_7 (Length: 266)
Name: NF1725_low_7
Description: NF1725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1725_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 13 - 198
Target Start/End: Original strand, 43170472 - 43170660
Alignment:
| Q |
13 |
cagaatcataggaaccatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttctaccccagtctaataaattcaaggg |
112 |
Q |
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| T |
43170472 |
cagaatcatagaaaccatcggaatcactacaaagaacaactatatcattgagtgctatggaaaggacaccagttctaccccaatctaataaattcaaggg |
43170571 |
T |
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| Q |
113 |
gaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaaca---caaaaaacatgaaaaatt |
198 |
Q |
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| T |
43170572 |
gaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaacacatcaaaaaacatgcaaaatt |
43170660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 43217864 - 43217676
Alignment:
| Q |
13 |
cagaatcataggaaccatcggaatcactacaaagaacaactgtatcattgagtgctatggaaaggacaccagttctaccccagtctaataaattcaaggg |
112 |
Q |
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| T |
43217864 |
cagaatcatagaaaccatcggaatcactacaaagaacaacaatatcattgagtgctatggaaaggacaccagttctaccccaatctaataaattcaaggg |
43217765 |
T |
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| Q |
113 |
gaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaaca---caaaaaacatgaaaaatt |
198 |
Q |
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| T |
43217764 |
gaaacattccaagatatctgtggcattcaaagttatctcacaactctgcaaaatcattttcacaaacacatcaaaaaacatgcaaaatt |
43217676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 193 - 248
Target Start/End: Complemental strand, 43217522 - 43217466
Alignment:
| Q |
193 |
aaaattagtccttatggtatgtagaatggac-aaataaatattacaactacgacatg |
248 |
Q |
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| T |
43217522 |
aaaattagtccttattgtatgtagaatggacaaaataaatattacaactacgacatg |
43217466 |
T |
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