View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1726-Insertion-2 (Length: 235)
Name: NF1726-Insertion-2
Description: NF1726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1726-Insertion-2 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 47 - 179
Target Start/End: Original strand, 9142831 - 9142963
Alignment:
| Q |
47 |
tattatttgagaactctaaattgacaattactaatgcaatgtatattcctgttttccataaccgcaatacttgattaagtcatgaaatcttgatgtataa |
146 |
Q |
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| T |
9142831 |
tattatttgagaactctaaattgacaattactaatgcaatgtatattcctgttttccataaccgcaatacttgattaagtcatgaaatcttgatgtataa |
9142930 |
T |
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| Q |
147 |
tataataattatcctcaggtatgataataaata |
179 |
Q |
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| T |
9142931 |
tataataattatccttaggtataataataaata |
9142963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 9191766 - 9191829
Alignment:
| Q |
172 |
aataaataaaagtaatcatatttagtgatattaaggaatgacgtcattaaatcgattaatataa |
235 |
Q |
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| T |
9191766 |
aataaataaaagtaatcatatttagtgatattaaggaatgacatcattaaatagattaatataa |
9191829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 9142760 - 9142804
Alignment:
| Q |
8 |
ttttactcaattactaattatatgttaagacaattgcattattat |
52 |
Q |
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| T |
9142760 |
ttttactcaattactaactatatgttaagacaattgctttattat |
9142804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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