View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_16 (Length: 516)
Name: NF17260_high_16
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Complemental strand, 5685385 - 5684888
Alignment:
| Q |
1 |
ctcggtaaagtgatatcgtttattaaaatatctcaacaaatacctacatagtaaaatttgattgaacggcggtgtaagtgcatagttatcaaaatctatt |
100 |
Q |
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| T |
5685385 |
ctcggtaaagtgatatcgtttattaaaatatctcaacaaatacctacatagtaaaatttgattgaacggcggtgtaagtgcatagttatcaaaatctatt |
5685286 |
T |
|
| Q |
101 |
gtaatttgtaagtacatgaaattttacattacatacaataagaacttataccaacataatatcaaaattataacctacgcgaacattgaagtaaaattat |
200 |
Q |
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| T |
5685285 |
gtaatttgtaagtacatgaaattttacattacatgcaataagaacttacaccaacataatatcaaaattataacctacgcgaacattgaagtaaaattat |
5685186 |
T |
|
| Q |
201 |
aacttacttgacaggtccttctctatccctcctcacaatcttatccatattatcataaggaaatatcaaattctgtaaactggcagctttaatccattta |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5685185 |
aacttacttgacaggtccttctctatccctcctcacaatcttatccatattatcataaggaaatatcaaattctgtaaactggcagctttaatccattta |
5685086 |
T |
|
| Q |
301 |
ggcaaattctccttcccaatcaacccataaactctctccctcatcggaccaggcaattccctcggatacctctgcaaaaagaattcagccaatgccaatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5685085 |
ggcaaattctccttcccaatcaacccataaactctctccctcatcggaccaggcaattccctcggatacctctgcaaaaagaattcagccaatgccaatt |
5684986 |
T |
|
| Q |
401 |
ccagcacatattgccctaagaaaaacaacctggaatgcccagacctaacatgcttctgcttcgttctctcacacgaaggatgctgaaaagccaaatac |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5684985 |
ccagcacatattgccctaagaaaaacaacctggaatgcccagacctaacatgcttctgcttcgttctctcacacgaaggatgctgaaaagccaaatac |
5684888 |
T |
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