View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_18 (Length: 497)
Name: NF17260_high_18
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 483
Target Start/End: Original strand, 5484216 - 5484698
Alignment:
| Q |
1 |
cagttgaattcattcctaactttgtccaagtagcaatttccaccctgaaattgtacatgtcaatcaaaatagtccttatgtaagcttacccgtgagacaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5484216 |
cagttgaattcattcctaactttgtccaagtagcaatttccaccctgaaattgtacatgtcaatcaaaatagtccttatgtaagcttacccgtgagacaa |
5484315 |
T |
|
| Q |
101 |
catgatacaacatgttcattgaaaatgtgccaatccaatccatgtgtactcaacaacaatgccacatctccaggatgaaactgctgcatgttatagtttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5484316 |
catgatacaacatgttcattgaaaatgtgccaatccaatccatgtgtactcaacaacaatgccacgtctccaggatgaaactgctgcatgttatagtttt |
5484415 |
T |
|
| Q |
201 |
gtatggtaaagcatagaatctaccttggctttaagatttgggaaaagagagttcttcgacttttactaaacaaaacaattgtcaatttagctctggagat |
300 |
Q |
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|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5484416 |
gtatggtaaagcatagaatttaccttggctttaagatttgggaaaagagagttcttcgacttttactgaacaaaacaattgtcaatttagctctggagat |
5484515 |
T |
|
| Q |
301 |
gtgcagtgatgtcatgtggagtccatgtagatttgccacattttctttaacgtaccattgaaataaaataagaataagaatcccacattgaaatataaaa |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5484516 |
gtgcagtgatgtcatgtggagtccatgtagatttgccacattttctttaacgtaccattgaaataaaataagaataagaatcccacattgaaatataaaa |
5484615 |
T |
|
| Q |
401 |
gcaaatataagtatcccacgttcttctataaaaggaagactcaatttaaggtatgtatttttatagaggtattttccgttcat |
483 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5484616 |
gcaaatataagtatcccacgttcttctataaaaggaagactcaatttaaggtatgtatttttatagaggtattttccgttcat |
5484698 |
T |
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