View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_30 (Length: 423)
Name: NF17260_high_30
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_30 |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 4542037 - 4542371
Alignment:
| Q |
19 |
aaagagggcataacttagttataacttctgtttgcatgttatagcatgatgcatgaatgttgcagcatcctgtgaccatttgtccttgatttcagagagg |
118 |
Q |
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| T |
4542037 |
aaagagggcataacttagttataacttctgtttgcatgttatagcatggtgcatgaatgttgcagcatcctctgaccatttgtccttgatttcagagagg |
4542136 |
T |
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| Q |
119 |
aaaattacgaagttcatacgtctaatcaaatccatgtactattaatagatcgaaactgcactatggacttgaataccttttctagttgttttaatagttc |
218 |
Q |
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| T |
4542137 |
aaacttacgaagttcatacgtctaatcaaatccatgtactattaatagatcgaaactgcactatggacttgaataccttttctagttgttttaatagttc |
4542236 |
T |
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| Q |
219 |
tctctttcaagcataataatgaattaatccccattaaacatagcattttccacgggtttcctctttcaaactcaaaaggctagtattaaaatttgaaaaa |
318 |
Q |
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| T |
4542237 |
tctctttcaagcataataatgaattaatccccattaaacatagcattttccactggtttcctctttcaaactcaaaaggctagtattaaaatttgaaaaa |
4542336 |
T |
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| Q |
319 |
cgttaaagagtgccctaggagattgattagaagga |
353 |
Q |
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| T |
4542337 |
cgttaaagagtgccctaggagattgattaaaagga |
4542371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 312
Target Start/End: Original strand, 4563558 - 4563632
Alignment:
| Q |
238 |
tgaattaatccccattaaacatagcattttccacgggtttcctctttcaaactcaaaaggctagtattaaaattt |
312 |
Q |
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| T |
4563558 |
tgaattaatctccattaaacaaagcattttccacattttccctctttcaaactcaaaaggctagtattaaaattt |
4563632 |
T |
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