View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_31 (Length: 416)
Name: NF17260_high_31
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_31 |
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Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 401
Target Start/End: Original strand, 3125082 - 3125467
Alignment:
| Q |
18 |
aaaagaaagagacacaaccttaccacacctaataataacaacagagaacaaaaaa--tagtgtgcatacatgaaattccagaaatttacagcaaccagct |
115 |
Q |
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| T |
3125082 |
aaaagaaagagacacaaccttaccacacctaataataacaacagagaacaaaaaaaatagtgtgcatacatgaaattccagaaatttacagcaaccagct |
3125181 |
T |
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| Q |
116 |
--tttttgaaataaaactatgttacatttcagtaaaaaccaattaaccataataatatctactattatatctcttggtgcatctcattggagggtctaca |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3125182 |
cttttttgaaataaaactatgttacatttcagtaaaaaccaattaaccataataatatctactattatatctcttggtgcatctcattggagggtctaca |
3125281 |
T |
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| Q |
214 |
gtacactctatcagcaatcagcaaatagagtaattagtacatatattataacatatagttgtgtgttaccagctggtaattaggaacaaaataatatgat |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3125282 |
gtacactctatcagcaatcagcaaatagagtaattagtacatat--tataacatatagttgtgtgttaccagctggtaattaggaacaaaataatatgat |
3125379 |
T |
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| Q |
314 |
gatgattcatgactaattactacctcttgcgtttcgacttcaaagaggtgacagattgagaattactgtgccagtttcttttcctttg |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3125380 |
gatgattcatgactaattactacctcttgcgtttcgacttcaaagaggtgacagattgagaattactgtgccagtttcttttcctttg |
3125467 |
T |
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