View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_32 (Length: 412)
Name: NF17260_high_32
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_32 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 25 - 393
Target Start/End: Complemental strand, 42359088 - 42358714
Alignment:
| Q |
25 |
taagataatagtagttatttgtcaccttttgttgcggcatatatgagccaaataggagatgacgtcgccagtaaaccaaccgtgtattgcggacgacacg |
124 |
Q |
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| T |
42359088 |
taagataatagtagttatttgtcaccttttgttgcggcatatatgagccaaataggagatgacgtcgccagtaaaccaaccgtgtattgcggacgacacg |
42358989 |
T |
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| Q |
125 |
ttcactatccttccttctatccctgtctcctttgccgtttcaaccatcttcttcatcaacatttttgtcaacacaaaatgacctgcaccacaatat--at |
222 |
Q |
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| T |
42358988 |
ttcactatccttccttcaatccctgtctcctttgccgtttcaaccatcttcttcatcaacatttttgtcaacacaaaatgacctgcaccacaatattaat |
42358889 |
T |
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| Q |
223 |
taatta-attaaattatatgcatatcaaat------nnnnnnntttgttgtaatcttactcacctaaataattagtggcaaaggtcatttcaactccatc |
315 |
Q |
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| T |
42358888 |
taattatattatattatatgcatatcaaattaaaaaaataaaaattgttgtaatcttactcacctaaataattagtggcaaaggtcatttcaactccatc |
42358789 |
T |
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| Q |
316 |
ctcagagattgcgtgctcttctgcaaacttcccagcattgtttctagtaaacagcaacaacaacactagtcaacaatc |
393 |
Q |
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| T |
42358788 |
ctcagagattgcgtgctcttctgcaaacttcccagcattgtttctagtaaacag---caacaacactagtcaacaatc |
42358714 |
T |
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