View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_high_35 (Length: 400)

Name: NF17260_high_35
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_high_35
NF17260_high_35
[»] chr3 (6 HSPs)
chr3 (1-399)||(13431107-13431505)
chr3 (268-391)||(11044352-11044475)
chr3 (268-386)||(29708955-29709073)
chr3 (291-374)||(17734457-17734540)
chr3 (291-374)||(19035726-19035809)
chr3 (46-94)||(29709241-29709289)
[»] chr7 (4 HSPs)
chr7 (32-391)||(40701984-40702357)
chr7 (163-262)||(33091380-33091479)
chr7 (269-384)||(33091506-33091620)
chr7 (272-381)||(12770387-12770495)
[»] chr8 (6 HSPs)
chr8 (44-262)||(18536660-18536881)
chr8 (32-251)||(37816908-37817129)
chr8 (163-262)||(12841288-12841387)
chr8 (268-388)||(18536938-18537058)
chr8 (268-391)||(12841108-12841231)
chr8 (11-102)||(12841450-12841541)
[»] chr1 (5 HSPs)
chr1 (114-234)||(19868440-19868560)
chr1 (268-391)||(19868282-19868405)
chr1 (268-391)||(13403304-13403426)
chr1 (313-381)||(34823300-34823368)
chr1 (114-252)||(13403463-13403600)
[»] scaffold0360 (1 HSPs)
scaffold0360 (271-387)||(548-663)
[»] chr2 (6 HSPs)
chr2 (268-384)||(38460791-38460907)
chr2 (43-211)||(40408863-40409035)
chr2 (291-381)||(15475127-15475217)
chr2 (236-340)||(40408642-40408746)
chr2 (269-384)||(16105914-16106029)
chr2 (163-220)||(16106106-16106163)
[»] chr5 (2 HSPs)
chr5 (114-221)||(15240408-15240515)
chr5 (1-64)||(36316395-36316458)
[»] chr4 (7 HSPs)
chr4 (292-381)||(8841515-8841604)
chr4 (1-64)||(41526129-41526192)
chr4 (207-262)||(41526337-41526392)
chr4 (289-381)||(19918523-19918615)
chr4 (1-64)||(16058285-16058348)
chr4 (1-64)||(17421294-17421357)
chr4 (1-64)||(30651595-30651658)
[»] scaffold0004 (1 HSPs)
scaffold0004 (32-104)||(241630-241702)
[»] scaffold0059 (1 HSPs)
scaffold0059 (291-381)||(40225-40315)
[»] chr6 (4 HSPs)
chr6 (1-64)||(22223562-22223625)
chr6 (1-64)||(22249397-22249460)
chr6 (268-391)||(25509098-25509221)
chr6 (167-229)||(26022404-26022466)
[»] scaffold0081 (1 HSPs)
scaffold0081 (268-340)||(12738-12810)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 13431505 - 13431107
Alignment:
Q  1 gttggtacagtacaaaccaaaccaaaccccttaaagcatagacatgaagtgacagttccacttttatctctccatcacaagttccaagacagatttggaa 100  Q
    |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13431505 gttggtacagtacaaagcaaaccaaatcccttaaagcatagacatgaagtgacagttccacttttatctctccatcacaagttccaagacagatttggaa 13431406  T
Q  101 aggtgtttgctccaacattctgaagtgtgtacgaagaatactacttatggacaagcccagatattcatctaacattcataggatgaacccataaacatat 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| | ||||||||    
T  13431405 aggtgtttgctccaacattctgaaatgtgtacgaagaatactacttatggacaagcccagatattcatcaaacattcatagaatgaacctagaaacatat 13431306  T
Q  201 ctgacattcatccatatgaacctaggaacaatatcctgatgaacacaacaacgttctgaagtctcttaagttcagaatgttgatctagattttcaagtaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13431305 ctgacattcatccatatgaacctaggaacaatatcctgatgaacacaacaacgttctgaagtctcttaagttcagaatgttgatccagattttcaagtaa 13431206  T
Q  301 aagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaaactctataaaaggagaggaacgcttcat 399  Q
    ||| |||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  13431205 aagctgctaagtcccaggacacatggcacaaaactattggtcatactccaacggctacaagaggtcaagaaactctataaaaggagaggaaggcttcat 13431107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 11044475 - 11044352
Alignment:
Q  268 aagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactcc-aacagctacaagaggtc 366  Q
    |||||||||||||||||| ||| |||||||  |||||||  ||||| || |||||||||||||| || ||||   | | |||  ||| ||||||||  ||    
T  11044475 aagttcagaatgttgatcaagactttcaagccaaagttgtcaagtcacaagacacgtggcacaagaccattgaaca-agtccttacaactacaagacatc 11044377  T
Q  367 aagaaactctataaaaggagaggaa 391  Q
    |||||||||||||||||||||||||    
T  11044376 aagaaactctataaaaggagaggaa 11044352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 386
Target Start/End: Complemental strand, 29709073 - 29708955
Alignment:
Q  268 aagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtca 367  Q
    ||||||||||||||  || ||||||| ||| ||||||| |||||| ||||||||| ||| ||||| ||||||   |    | |||| ||||| ||||| |    
T  29709073 aagttcagaatgttattccagattttaaagcaaaagttactaagtaccaggacacatgggacaaagctattgaacacgtcctaacaactacatgaggtta 29708974  T
Q  368 agaaactctataaaaggag 386  Q
    |||||||||||||||||||    
T  29708973 agaaactctataaaaggag 29708955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 17734457 - 17734540
Alignment:
Q  291 tttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaaact 374  Q
    |||||||| ||||||| |  ||||||||||||||||||||| || | ||||||  ||||||| |||||||  | ||||||||||    
T  17734457 tttcaagtgaaagttggtgggtcccaggacacgtggcacaagaccagtggttactctccaacggctacaaaggctcaagaaact 17734540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 291 - 374
Target Start/End: Original strand, 19035726 - 19035809
Alignment:
Q  291 tttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaaact 374  Q
    |||||||| ||||||| |  ||||||||||||||||||||| || | ||||||  ||||||| |||||||  | ||||||||||    
T  19035726 tttcaagtgaaagttggtgggtcccaggacacgtggcacaagaccagtggttactctccaacggctacaaaggctcaagaaact 19035809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 46 - 94
Target Start/End: Complemental strand, 29709289 - 29709241
Alignment:
Q  46 gaagtgacagttccacttttatctctccatcacaagttccaagacagat 94  Q
    ||||||||| ||||||||| ||||||||  || ||||||||||||||||    
T  29709289 gaagtgacacttccactttcatctctcctacataagttccaagacagat 29709241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 32 - 391
Target Start/End: Original strand, 40701984 - 40702357
Alignment:
Q  32 taaagcatagacatgaagtgacagttccacttttatctctccatcacaagttccaagac-agatttggaaaggtgtttgctc--caacattctgaagtgt 128  Q
    |||||||| | |||||| ||||| |||||||||| ||| |||  ||||||||||||||| |||| |||||||   ||||  |  ||||||||| |||| |    
T  40701984 taaagcatgggcatgaaatgacaattccacttttctctttcctgcacaagttccaagaccagatctggaaagacttttgtccaacaacattctaaagtat 40702083  T
Q  129 gtacgaagaatactacttatggacaagcccagatattcatctaacattcataggatgaacccataaacatatctgacattcatccatatgaacctaggaa 228  Q
    |||||||||  | |||| ||||||||||||| | |||||||| | | ||||||||||||||||||||||||||||| |||| |||||||||||| || ||    
T  40702084 gtacgaagagcattactcatggacaagcccataaattcatctgatactcataggatgaacccataaacatatctgatattcgtccatatgaacccagaaa 40702183  T
Q  229 caatatcctgatgaacacaacaacgttctg-----------aagtctcttaagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccag 317  Q
    || |||||| |||||||||||||| |||||           ||   ||||||||||||||||||||||  || ||||||| |||||||||| ||||||||    
T  40702184 cattatcctaatgaacacaacaacattctgatgaacccaaaaacattcttaagttcagaatgttgatcaggactttcaagcaaaagttgctgagtcccag 40702283  T
Q  318 gacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaaactctataaaaggagaggaa 391  Q
    ||||||||||||||  |||||||  |    | |||| ||||||||| || | ||||||||||||||||||||||    
T  40702284 gacacgtggcacaaggctattggacacgtcctaacaactacaagagatccataaactctataaaaggagaggaa 40702357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 33091380 - 33091479
Alignment:
Q  163 attcatctaacattcataggatgaacccataaacatatctgacattcatccatatgaacctaggaacaatatcctgatgaacacaacaacgttctgaagt 262  Q
    |||||||||||||||||||||||||  || ||||| | |||||||||||||||||||||  | ||||||||||||||| ||||||||||| |||| ||||    
T  33091380 attcatctaacattcataggatgaagtcaaaaacacacctgacattcatccatatgaactcatgaacaatatcctgataaacacaacaacattctaaagt 33091479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 384
Target Start/End: Original strand, 33091506 - 33091620
Alignment:
Q  269 agttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaa 368  Q
    |||||| |||||||||| ||| |||||||||||||||| |  |||||| ||||||| ||| || || |||||  | |  ||||| |||||||||||||||    
T  33091506 agttcaaaatgttgatcaagactttcaagtaaaagttgatgggtcccaagacacgt-gcataagaccattggacacatcccaacggctacaagaggtcaa 33091604  T
Q  369 gaaactctataaaagg 384  Q
    | ||||||||||||||    
T  33091605 ggaactctataaaagg 33091620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 272 - 381
Target Start/End: Original strand, 12770387 - 12770495
Alignment:
Q  272 tcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaa 371  Q
    |||||||||| | | ||||||||||||||||| |  |  | |||||||||||||||| || || |||||| |  |||||||| ||||||||| ||||| |    
T  12770387 tcagaatgttcacccagattttcaagtaaaagctagtggggcccaggacacgtggcaaaagaccattggtcaccctccaacaactacaagagctcaag-a 12770485  T
Q  372 actctataaa 381  Q
    ||||||||||    
T  12770486 actctataaa 12770495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 84; Significance: 8e-40; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 44 - 262
Target Start/End: Original strand, 18536660 - 18536881
Alignment:
Q  44 atgaagtgacagttccacttttatctctccatcacaagttccaagacagatttggaaaggtgtttgctcca---acattctgaagtgtgtacgaagaata 140  Q
    |||||||||||||| ||||||| ||||| |  |||||||||||||||| || | ||||||  |||  ||||   ||||| |||||| ||||| ||||| |    
T  18536660 atgaagtgacagtttcacttttctctcttctgcacaagttccaagacaaatctcgaaaggctttttgtccatcaacattatgaagtatgtacaaagaaca 18536759  T
Q  141 ctacttatggacaagcccagatattcatctaacattcataggatgaacccataaacatatctgacattcatccatatgaacctaggaacaatatcctgat 240  Q
     |||| |||||||||| || | |||||||| ||||||||| |||||||| | ||||| || |||||||||||||| |||| | |||||||||||||||||    
T  18536760 ttactcatggacaagctcataaattcatctgacattcataagatgaacctagaaacacatatgacattcatccatgtgaaaccaggaacaatatcctgat 18536859  T
Q  241 gaacacaacaacgttctgaagt 262  Q
    |||||||||||| |||||||||    
T  18536860 gaacacaacaacattctgaagt 18536881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 32 - 251
Target Start/End: Original strand, 37816908 - 37817129
Alignment:
Q  32 taaagcatagacatgaagtgacagttccacttttatctctccatcacaagttccaagacagatttggaaaggtgtttgctc--caacattctgaagtgtg 129  Q
    |||||||| | |||||||||||| |||||||||  |||||||  ||||||||| ||| |||||||| |||||  |||| ||  ||  ||| |||| | ||    
T  37816908 taaagcatgggcatgaagtgacaattccactttcctctctcctgcacaagttctaaggcagatttgcaaaggcttttgttcaacattattttgaattatg 37817007  T
Q  130 tacgaagaatactacttatggacaagcccagatattcatctaacattcataggatgaacccataaacatatctgacattcatccatatgaacctaggaac 229  Q
    || ||||||   |||| ||||| || |||  | |||||||| |||||||||||||||||||| ||||| || |||||||||||| ||||||| |||||||    
T  37817008 tatgaagaacgatactcatggaaaatcccttaaattcatctgacattcataggatgaacccaaaaacacatatgacattcatccttatgaacttaggaac 37817107  T
Q  230 aatatcctgatgaacacaacaa 251  Q
    ||||||||||||||||||||||    
T  37817108 aatatcctgatgaacacaacaa 37817129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 163 - 262
Target Start/End: Complemental strand, 12841387 - 12841288
Alignment:
Q  163 attcatctaacattcataggatgaacccataaacatatctgacattcatccatatgaacctaggaacaatatcctgatgaacacaacaacgttctgaagt 262  Q
    |||||||| |||||||||||||||||| | ||||| |||||||||||||||||||||||| | |||||||||  |||| ||||||||||| |||| ||||    
T  12841387 attcatctgacattcataggatgaaccaagaaacacatctgacattcatccatatgaacccatgaacaatattatgattaacacaacaacattctaaagt 12841288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 268 - 388
Target Start/End: Original strand, 18536938 - 18537058
Alignment:
Q  268 aagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtca 367  Q
    |||||||||||||||||| ||| ||| ||| |||| |||| |||||||| | |||||||||||| || |||||  |    | ||||  ||||||||||||    
T  18536938 aagttcagaatgttgatcaagacttttaagaaaaatttgccaagtcccaaggcacgtggcacaacaccattggacacgtcctaacaattacaagaggtca 18537037  T
Q  368 agaaactctataaaaggagag 388  Q
    |||||||||||||||||||||    
T  18537038 agaaactctataaaaggagag 18537058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 12841231 - 12841108
Alignment:
Q  268 aagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtca 367  Q
    ||||| |||||||||||| | | |||||||||||||||| |  |||||| ||||||||| |||| || ||| | || |  ||||  ||||||||||||||    
T  12841231 aagtttagaatgttgatcaaaactttcaagtaaaagttgatgggtcccaagacacgtggaacaagaccatttgatacatcccaatggctacaagaggtca 12841132  T
Q  368 agaaactctataaaaggagaggaa 391  Q
    |  |||||||||||||||||||||    
T  12841131 atgaactctataaaaggagaggaa 12841108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 12841541 - 12841450
Alignment:
Q  11 tacaaaccaaaccaaaccccttaaagcatagacatgaagtgacagttccacttttatctctccatcacaagttccaagacagatttggaaag 102  Q
    |||||| ||||||||| ||| |||||||||| | |||||||||| |||||||||  ||||||   ||| ||||||||||||| |||| ||||    
T  12841541 tacaaagcaaaccaaatcccctaaagcataggcttgaagtgacaattccactttattctctcatgcactagttccaagacagttttgaaaag 12841450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 19868560 - 19868440
Alignment:
Q  114 aacattctgaagtgtgtacgaagaatactacttatggacaagcccagatattcatctaacattcataggatgaacccataaacatatctgacattcatcc 213  Q
    ||||||||||||| ||||||||||| | || | |||||||  |||| | ||||||||||||| |||||||||||||||||||   ||||||| |||||||    
T  19868560 aacattctgaagtatgtacgaagaacaatattcatggacatacccaaaaattcatctaacatgcataggatgaacccataaattcatctgactttcatcc 19868461  T
Q  214 atatgaacctaggaacaatat 234  Q
    ||||||||  | |||||||||    
T  19868460 atatgaacgcaagaacaatat 19868440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 19868405 - 19868282
Alignment:
Q  268 aagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtca 367  Q
    |||||||||||||| ||| ||| ||||||| ||||||| |||||||||| |||| ||||||||| || |||||  |    | ||||  || ||| |||||    
T  19868405 aagttcagaatgttaatccagactttcaagcaaaagtttctaagtcccatgacatgtggcacaagacaattggacacgtcctaacaaatataagtggtca 19868306  T
Q  368 agaaactctataaaaggagaggaa 391  Q
    ||||||||||||||||||||||||    
T  19868305 agaaactctataaaaggagaggaa 19868282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 391
Target Start/End: Complemental strand, 13403426 - 13403304
Alignment:
Q  268 aagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtca 367  Q
    ||||||| |||||||||| ||| || |||| |||||||||||||||| || ||||||| ||||| || |||||  |    | |||| |||||||||||||    
T  13403426 aagttcaaaatgttgatccagaatt-caagcaaaagttgctaagtcctagaacacgtgacacaacaccattggacacgtcctaacaactacaagaggtca 13403328  T
Q  368 agaaactctataaaaggagaggaa 391  Q
    ||||||| |||||||| |||||||    
T  13403327 agaaactttataaaagaagaggaa 13403304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 34823300 - 34823368
Alignment:
Q  313 cccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaaactctataaa 381  Q
    |||||||||  ||||||||||  |||||| |  |||||||||||| |||||||||||||||||||||||    
T  34823300 cccaggacatatggcacaaaatcattggtcactctccaacagctataagaggtcaagaaactctataaa 34823368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 252
Target Start/End: Complemental strand, 13403600 - 13403463
Alignment:
Q  114 aacattctgaagtgtgtacgaagaatactacttatggacaagcccagatattcatctaacattcataggatgaacccataaacatatctgacattcatcc 213  Q
    ||||||||||||| |||| |||||| | |||| | |||||||| || | ||||||||    |||||| ||||| |||| ||||| || ||| ||||||||    
T  13403600 aacattctgaagtatgtaagaagaacaatactcacggacaagctcaaaaattcatcttgg-ttcataagatgagcccaaaaacacatttgaaattcatcc 13403502  T
Q  214 atatgaacctaggaacaatatcctgatgaacacaacaac 252  Q
    ||||||||| |  || |||||  ||||||||||||||||    
T  13403501 atatgaacccaacaaaaatatattgatgaacacaacaac 13403463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 271 - 387
Target Start/End: Original strand, 548 - 663
Alignment:
Q  271 ttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaaga 370  Q
    ||||||||||||||| | | |||||||||||||||| |  | |||| || ||||||||||| ||||||||| | ||| |||| |||||||||| ||||||    
T  548 ttcagaatgttgatccaaactttcaagtaaaagttggtggg-cccatgatacgtggcacaagactattggtcacactacaacggctacaagagttcaaga 646  T
Q  371 aactctataaaaggaga 387  Q
    |||||||| ||||||||    
T  647 aactctattaaaggaga 663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 384
Target Start/End: Original strand, 38460791 - 38460907
Alignment:
Q  268 aagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtca 367  Q
    |||||||||||||||||| ||| ||| ||  |||||||| ||||| ||| |||||||||||||||||||||||  |    | |||| ||||| |||||||    
T  38460791 aagttcagaatgttgatcaagacttttaaccaaaagttgttaagtaccaagacacgtggcacaaaactattgggcacgtcctaacaactacatgaggtca 38460890  T
Q  368 agaaactctataaaagg 384  Q
    |||||||||||||||||    
T  38460891 agaaactctataaaagg 38460907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 40409035 - 40408863
Alignment:
Q  43 catgaagtgacagttccacttttatctctccatcacaagttccaagacagatttggaaaggtgtttgctccaaca----ttctgaagtgtgtacgaagaa 138  Q
    ||||||||| ||  || |||||| ||||||   |||||||||||||||||||||| |||||| |||  || ||||    || |||||| |||||||||||    
T  40409035 catgaagtgtcaactctacttttctctctcttgcacaagttccaagacagatttgaaaaggttttttgtctaacaacatttttgaagtatgtacgaagaa 40408936  T
Q  139 tactacttatggacaagcccagatattcatctaacattcataggatgaacccataaacatatctgacattcat 211  Q
     |  ||| ||||||||||| ||| |||||| | ||||||||| ||||||| |||||||| ||| ||| |||||    
T  40408935 cataactcatggacaagcctagaaattcatgtgacattcatatgatgaactcataaacacatccgactttcat 40408863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 15475217 - 15475127
Alignment:
Q  291 tttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaaactctataaa 381  Q
    ||||||| |||||||| |  |||| |||||||||||||||| |||||| || | |||||| | ||||||||||||||||| ||||||||||    
T  15475217 tttcaagcaaaagttggtgggtcctaggacacgtggcacaagactattagtcacactccagctgctacaagaggtcaagacactctataaa 15475127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 236 - 340
Target Start/End: Complemental strand, 40408746 - 40408642
Alignment:
Q  236 ctgatgaacacaacaacgttctgaagtctcttaagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaact 335  Q
    |||| |||||||||||| ||||||||| | | ||||||| |||||||||| ||  ||| ||| |||||||||||||||   |||||||||||||||  ||    
T  40408746 ctgaagaacacaacaacattctgaagtatttgaagttcataatgttgatcaagtcttttaagcaaaagttgctaagtcttgggacacgtggcacaaggct 40408647  T
Q  336 attgg 340  Q
    |||||    
T  40408646 attgg 40408642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 269 - 384
Target Start/End: Complemental strand, 16106029 - 16105914
Alignment:
Q  269 agttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaa 368  Q
    |||||||||| |||||| ||| |||| || |||||||| |  |||| |||||||||||||||| || ||| |  | | |||||| |||||||||||| ||    
T  16106029 agttcagaatattgatcaagactttcgagcaaaagttggtgggtcctaggacacgtggcacaagaccattagacacattccaacggctacaagaggttaa 16105930  T
Q  369 gaaactctataaaagg 384  Q
    | ||||||||||||||    
T  16105929 ggaactctataaaagg 16105914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 220
Target Start/End: Complemental strand, 16106163 - 16106106
Alignment:
Q  163 attcatctaacattcataggatgaacccataaacatatctgacattcatccatatgaa 220  Q
    |||||||| ||||||||||||||||||||||||   |||| |||||||||||||||||    
T  16106163 attcatctgacattcataggatgaacccataaattcatctaacattcatccatatgaa 16106106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 114 - 221
Target Start/End: Complemental strand, 15240515 - 15240408
Alignment:
Q  114 aacattctgaagtgtgtacgaagaatactacttatggacaagcccagatattcatctaacattcataggatgaacccataaacatatctgacattcatcc 213  Q
    ||||||||||||| ||||||| ||| | || | |||||||| |||| | |||||||| | ||||||||||||||||||||| |  || ||||||||||||    
T  15240515 aacattctgaagtatgtacgatgaacaatattcatggacaaacccataaattcatctgaaattcataggatgaacccataagctcatttgacattcatcc 15240416  T
Q  214 atatgaac 221  Q
    ||||||||    
T  15240415 atatgaac 15240408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 36316395 - 36316458
Alignment:
Q  1 gttggtacagtacaaaccaaaccaaaccccttaaagcatagacatgaagtgacagttccacttt 64  Q
    |||||||| ||||||| ||||||||| ||| |||||||| ||  ||||||||||| ||||||||    
T  36316395 gttggtactgtacaaagcaaaccaaatcccctaaagcatggaagtgaagtgacagctccacttt 36316458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 292 - 381
Target Start/End: Original strand, 8841515 - 8841604
Alignment:
Q  292 ttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaaactctataaa 381  Q
    ||||||||||||||| |  ||||||||||||||||||||| ||||||||| | ||| |||  |||||||||| |||||| ||||||||||    
T  8841515 ttcaagtaaaagttggtgggtcccaggacacgtggcacaagactattggtcacacttcaatggctacaagagttcaagacactctataaa 8841604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 41526129 - 41526192
Alignment:
Q  1 gttggtacagtacaaaccaaaccaaaccccttaaagcatagacatgaagtgacagttccacttt 64  Q
    |||||||| ||||||| ||||||||| ||| |||||||| | | ||||||||||||||||||||    
T  41526129 gttggtactgtacaaagcaaaccaaatcccctaaagcatgggcttgaagtgacagttccacttt 41526192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 262
Target Start/End: Original strand, 41526337 - 41526392
Alignment:
Q  207 ttcatccatatgaacctaggaacaatatcctgatgaacacaacaacgttctgaagt 262  Q
    |||||||| ||||||| |||||||||||| |||||||||||||||| || ||||||    
T  41526337 ttcatccacatgaacccaggaacaatatcatgatgaacacaacaacattttgaagt 41526392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 19918523 - 19918615
Alignment:
Q  289 attttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaaactctataaa 381  Q
    |||||||||||||||||  |  | ||||||| || |||||||| || |||| | |  ||||||||||||||||||||||||| || |||||||    
T  19918523 attttcaagtaaaagttagtgggacccaggaaacatggcacaagaccattgctcactctccaacagctacaagaggtcaagacaccctataaa 19918615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16058285 - 16058348
Alignment:
Q  1 gttggtacagtacaaaccaaaccaaaccccttaaagcatagacatgaagtgacagttccacttt 64  Q
    |||||||| ||||||| ||||||||| |||||||||||| ||  ||||||||||| | ||||||    
T  16058285 gttggtactgtacaaagcaaaccaaatcccttaaagcatggaagtgaagtgacagctacacttt 16058348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 17421357 - 17421294
Alignment:
Q  1 gttggtacagtacaaaccaaaccaaaccccttaaagcatagacatgaagtgacagttccacttt 64  Q
    |||||||| ||||||| ||||||||| ||| |||||||| ||  ||||||||||| ||||||||    
T  17421357 gttggtactgtacaaagcaaaccaaatcccctaaagcatggaagtgaagtgacagctccacttt 17421294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 30651595 - 30651658
Alignment:
Q  1 gttggtacagtacaaaccaaaccaaaccccttaaagcatagacatgaagtgacagttccacttt 64  Q
    |||||||| ||||||||||||||||| ||| |||||||| ||  ||||||||||  ||||||||    
T  30651595 gttggtactgtacaaaccaaaccaaatcccctaaagcatggaagtgaagtgacaactccacttt 30651658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 241702 - 241630
Alignment:
Q  32 taaagcatagacatgaagtgacagttccacttttatctctccatcacaagttccaagacagatttggaaaggt 104  Q
    ||||||||||||||||||||||| |||||||||  |||||||  |||||||| |||||||||| || ||||||    
T  241702 taaagcatagacatgaagtgacaattccactttcctctctcctgcacaagtttcaagacagatctgcaaaggt 241630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 291 - 381
Target Start/End: Complemental strand, 40315 - 40225
Alignment:
Q  291 tttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtcaagaaactctataaa 381  Q
    |||||| ||||||||| |  |||||| |||||||||||||| ||||||||| | |||||||   |||||| ||||||||| ||||||||||    
T  40315 tttcaaataaaagttggtgggtcccaagacacgtggcacaagactattggtcacactccaatgactacaaaaggtcaagacactctataaa 40225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22223625 - 22223562
Alignment:
Q  1 gttggtacagtacaaaccaaaccaaaccccttaaagcatagacatgaagtgacagttccacttt 64  Q
    |||||||| ||||||| ||||||||| ||| |||||||| || |||||||||||| ||||||||    
T  22223625 gttggtactgtacaaagcaaaccaaatcccctaaagcatggaaatgaagtgacagctccacttt 22223562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 22249460 - 22249397
Alignment:
Q  1 gttggtacagtacaaaccaaaccaaaccccttaaagcatagacatgaagtgacagttccacttt 64  Q
    |||||||| ||||||| ||||||||| ||| |||||||| || |||||||||||| ||||||||    
T  22249460 gttggtactgtacaaagcaaaccaaatcccctaaagcatggaaatgaagtgacagctccacttt 22249397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 25509098 - 25509221
Alignment:
Q  268 aagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattggttatactccaacagctacaagaggtca 367  Q
    ||||||| |||||||||| ||| ||| ||| ||||||| | || || || |||| ||||||||| ||||||||  |      |||| |||||||||||||    
T  25509098 aagttcataatgttgatcaagacttttaagcaaaagtttccaaatctcaagacatgtggcacaagactattggacacgtcataacaactacaagaggtca 25509197  T
Q  368 agaaactctataaaaggagaggaa 391  Q
    |||||||||||||||| |||||||    
T  25509198 agaaactctataaaagaagaggaa 25509221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 26022404 - 26022466
Alignment:
Q  167 atctaacattcataggatgaacccataaacatatctgacattcatccatatgaacctaggaac 229  Q
    |||||||||||||||||||| |||| | ||  |||| |||||||| ||||| |||||||||||    
T  26022404 atctaacattcataggatgagcccaaacactcatctaacattcattcatataaacctaggaac 26022466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 340
Target Start/End: Complemental strand, 12810 - 12738
Alignment:
Q  268 aagttcagaatgttgatctagattttcaagtaaaagttgctaagtcccaggacacgtggcacaaaactattgg 340  Q
    ||||||| ||||||| || ||||||| | | |||||||||||||| ||| |||||||| |||||  |||||||    
T  12810 aagttcataatgttgttccagattttaatgcaaaagttgctaagtaccaagacacgtgacacaaggctattgg 12738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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