View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_42 (Length: 367)
Name: NF17260_high_42
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 351
Target Start/End: Original strand, 43743455 - 43743795
Alignment:
| Q |
18 |
gatatgttgataaccatttaagatttctgttggtactcactcaatatgtataagtaacaattaaaatgtctttatatatcatcattcattaactgctatc |
117 |
Q |
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| T |
43743455 |
gatatgttgataaccatttaagatttctgttggtactcactcaatacgtgtaattaacaattaaaatgtctttatatatcatcattcattaactgctatc |
43743554 |
T |
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| Q |
118 |
ataaaacaaattatcaggttgaattcaaactaacttttaaagaaataaatctgaatctcactatgtattcgtttggtagagtaaagaacttcaaagcagt |
217 |
Q |
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| T |
43743555 |
ataaaacaaattatcaggttgaattcaaactaacttttaaagaaataaatctgaatctcactatgtattcgtttggtagagtaaagaacttcaaagcagt |
43743654 |
T |
|
| Q |
218 |
tagataaattaatagagaagagtgtc--------ccatttttgacaaataacaacgcggtttctattaatattattatgaatcttatttggtgcttacgt |
309 |
Q |
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||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43743655 |
tagat-aattaatagagaagagtgtcgtttactactatttttgacaaataacaacgcggtttctattaatattattatgaatcttatttggtgcttacgt |
43743753 |
T |
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| Q |
310 |
gaatgtacattgaacttgtttgtaattgcatctttaagaata |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
43743754 |
gaatgtacattgaacttgtttgtaattgcatctttaagaata |
43743795 |
T |
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