View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_43 (Length: 365)
Name: NF17260_high_43
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_43 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 19 - 349
Target Start/End: Complemental strand, 192864 - 192533
Alignment:
| Q |
19 |
cttatgggatttcatcctttagtctgtagagatcatttggatttggaacaaggtttcatactgttaacacttgttgt-gtagatagagttttgttatcat |
117 |
Q |
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| T |
192864 |
cttatgtgatttcatcctttagtctgtagagatcatttggatttggaacaaggtttcatactgttaacacttgttgttgtagatagagttttgttatcat |
192765 |
T |
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| Q |
118 |
tatctcaattcaatattgttctattctgacttgattgattaatatttgctatatttgagaaattatgatcgtgttgttatcatcttctttgaactacaat |
217 |
Q |
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| T |
192764 |
tatctcaattcaatattgttctattctgacttgattgattaatatttgctatatttgagaaattatgatcgtgttgttatcatcttctttgaactacaat |
192665 |
T |
|
| Q |
218 |
atatctcttattccatatcaatggtgctttcaataatttgatcttcaaaatgatagtatatcaattttcaactctttggaggggtttgtaaaaataatgc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
192664 |
atatctcttattccatatcaatggtgctttcaataatttgatcttcaaaatgatagtatatcaactttcaactctttggaggggtttgtaaaaataatgc |
192565 |
T |
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| Q |
318 |
ttgaattttatcaacttttttatctatgtttg |
349 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
192564 |
ttgaattttatcaacttttttatctatgtttg |
192533 |
T |
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