View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_49 (Length: 316)
Name: NF17260_high_49
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_49 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 46998410 - 46998126
Alignment:
| Q |
13 |
acatcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46998410 |
acatcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcag |
46998311 |
T |
|
| Q |
113 |
gccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttaga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46998310 |
gccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgttgattgcaaaaacagtctcggagctaaatttattcatgcaactttaga |
46998211 |
T |
|
| Q |
213 |
tatcaccatcaatgatattctctcacctgttgatgtgccacctattgttcattcattctttgaccaccacagagcagtcaaccat |
297 |
Q |
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| T |
46998210 |
tatcaccatcaatgatattctctcacctgttgatgtgccacctattgttcattcattctttgaccaccacagagcagtcaaccat |
46998126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 61 - 297
Target Start/End: Complemental strand, 46996114 - 46995878
Alignment:
| Q |
61 |
aaactgaaacactccctttccctcacacttttccatttccatcccctctcaggccgtcttgttactaaaaaatctgaagaccctcatttttacactgttt |
160 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||| ||||||| ||||||||||| |
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| T |
46996114 |
aaactcaaacactccctttccctcacacttttccatttctatcccctctcaggtcgtcttgttactaaaaaatccgaagatcctcattcttacactgttt |
46996015 |
T |
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| Q |
161 |
ttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatcaccatcaatgatattctctcacctgttgatgtgccacctattgt |
260 |
Q |
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| T |
46996014 |
ttgtcgattgcaaaaacagtctcggagctaaatttattcatgcaactttagatattaccatcaatgatattctctcaccaattgatgtcccacccattgt |
46995915 |
T |
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| Q |
261 |
tcattcattctttgaccaccacagagcagtcaaccat |
297 |
Q |
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| T |
46995914 |
tcattcattctttgaccatcacagagcagtcaaccat |
46995878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 13 - 297
Target Start/End: Complemental strand, 46981334 - 46981050
Alignment:
| Q |
13 |
acatcatcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcag |
112 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
46981334 |
acatcatcatcactaaaccaacaacatttcatagagaacctggtggagaaactgaaacactccctttccctcacgcttttccatttctatcccctctcag |
46981235 |
T |
|
| Q |
113 |
gccgtcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttaga |
212 |
Q |
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| |||||||||||||||||||| ||||| ||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46981234 |
gtcgtcttgttactaaaaaatccgaagatcctgattcttacactgttttcgtcgattgcaaaaacagtcccggagctaaatttattcatgcaactttaga |
46981135 |
T |
|
| Q |
213 |
tatcaccatcaatgatattctctcacctgttgatgtgccacctattgttcattcattctttgaccaccacagagcagtcaaccat |
297 |
Q |
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||||||||| |||||||| ||| | || ||||||| ||||| ||||| ||||| |||||||| || ||| ||||||||||||| |
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| T |
46981134 |
tatcaccataaatgatatcctcacccccattgatgtcccacccattgtccattcgttctttgatcatgacaaagcagtcaaccat |
46981050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 46975343 - 46975063
Alignment:
| Q |
17 |
catcatcactaaacaaacaacatttcatagagaacttggtagagaaactgaaacactccctttccctcacacttttccatttccatcccctctcaggccg |
116 |
Q |
| |
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|||||||||||||| ||||||| ||||| |||||| | || || ||||| |||||||| ||||| ||||||||||| |||| ||||||| || || || |
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| T |
46975343 |
catcatcactaaaccaacaacacttcattgagaacctagtggacaaactcaaacactctctttctctcacactttttcattattatcccctgtctggtcg |
46975244 |
T |
|
| Q |
117 |
tcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatc |
216 |
Q |
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|
|||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
46975243 |
tcttgttactaaaaaatctgaagaccctcattcttacactgttttcgttgattgcaaaaacagtcgcggagctagatttattcatgcaactttagatatc |
46975144 |
T |
|
| Q |
217 |
accatcaatgatattctctcacctgttgatgtgccacctattgttcattcattctttgaccaccacagagcagtcaaccat |
297 |
Q |
| |
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||||| ||||||||||||||||| |||||||| ||||| ||||| || || |||||||| || ||| |||||||| |||| |
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| T |
46975143 |
accataaatgatattctctcaccagttgatgtcccacccattgtccaatcgttctttgatcatgacaaagcagtcagccat |
46975063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 117 - 297
Target Start/End: Complemental strand, 47001998 - 47001818
Alignment:
| Q |
117 |
tcttgttactaaaaaatctgaagaccctcatttttacactgtttttgtcgattgcaaaaacagtcttggagctaaatttattcatgcaactttagatatc |
216 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
47001998 |
tcttgttactcaaaaatctgaagatcctcattcttacactgtttttgtcgattgcaaaaacagtcgaggagctaaatttattcttgcaactttagatatc |
47001899 |
T |
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| Q |
217 |
accatcaatgatattctctcacctgttgatgtgccacctattgttcattcattctttgaccaccacagagcagtcaaccat |
297 |
Q |
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||| |||||| ||||||||||||||||||||| ||||| || ||| | || ||||||||||||||||||||||| |||||| |
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| T |
47001898 |
accgtcaatgttattctctcacctgttgatgtcccacccatagttaaatcgttctttgaccaccacagagcagttaaccat |
47001818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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