View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_high_5 (Length: 702)

Name: NF17260_high_5
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_high_5
NF17260_high_5
[»] chr7 (1 HSPs)
chr7 (54-687)||(48254801-48255433)
[»] chr5 (1 HSPs)
chr5 (59-171)||(39282245-39282357)


Alignment Details
Target: chr7 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 54 - 687
Target Start/End: Original strand, 48254801 - 48255433
Alignment:
Q  54 taactaatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgct 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48254801 taactaatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgct 48254900  T
Q  154 aggttggaagtgaaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaag 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48254901 aggttggaagtgaaatcattttggccaatataaaatgtatacaaagattttccaagtatatctggtgatggaagtttggtttctgagcaacaattaaaag 48255000  T
Q  254 aaaatagtatgttaatatattaacgaaggaaattaaaaggactaaacttagatgcagtagcagacgtaattttcgaaccattttaaaattgttagtgcca 353  Q
    ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  48255001 aaattagtatgttaatatattaacgaaggaaattaaaagga-taaacttagatgcagtaccagacgtaattttcaaaccattttaaaattgttagtgcca 48255099  T
Q  354 gttataagagtagaaagtttgtgcattatgtaccttgttgatcagcttctttaactttggttgcaaattgtttcatttggttgagctgaatagcaaggga 453  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  48255100 gttataagagtagaaagtttgtgcattatgtaccttgttgatcagcttctttaactttggttgcaaattgtttcatttgggtgagctgaatagcaaggga 48255199  T
Q  454 gaaagggctgatcccagtgacaaacaaagaagtattaggtagaagcacagtggatgccaatgtagcatagttggctccatgtttataataagatcctatt 553  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48255200 gaaagggctgatcccagtgacaaacaaagaagtattaggtagaagcacagtggatgccaatgtagcatagttggctccatgtttataataagatcctatt 48255299  T
Q  554 gattgtagatatggactcaaaaatggaattccaatagcttgagctgccagaatcaaataaataaaaatgtttgattgtttaataaattatatatagctct 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  48255300 gattgtagatatggactcaaaaatggaattccaatagcttgagctgccagaatcaaataaatataaatgtttgattgtttaataaatgatatatagctct 48255399  T
Q  654 caaccattaaattatgtctctaatcatggtgaat 687  Q
    ||||||||||||||||||||||||||||||||||    
T  48255400 caaccattaaattatgtctctaatcatggtgaat 48255433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 39282357 - 39282245
Alignment:
Q  59 aatagacataagttactcttactttaatggtagcggcaatttgtgaaacaacttgagggagaaactcttgcacaccacctgtgccaatgactgctaggtt 158  Q
    ||||| |||||| ||  ||||| |||||||| || ||||| ||||||| |||| || | ||| |||| ||||| | |||| |||| |||||||||| |||    
T  39282357 aatagtcataaggtatccttaccttaatggtggcagcaatctgtgaaataactagaagcagatactcgtgcactctacctatgccgatgactgctacgtt 39282258  T
Q  159 ggaagtgaaatca 171  Q
    |||||||||||||    
T  39282257 ggaagtgaaatca 39282245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University