View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_high_51 (Length: 314)

Name: NF17260_high_51
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_high_51
NF17260_high_51
[»] chr2 (1 HSPs)
chr2 (10-296)||(30954379-30954671)


Alignment Details
Target: chr2 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 296
Target Start/End: Complemental strand, 30954671 - 30954379
Alignment:
Q  10 catcatcaatcaaaatccataattaaaacaacgtgataattcgttaactccaaat-----ataataagtttaggatctcatcatccaagcaaaattaaat 104  Q
    |||||| ||||||||||||||||||| |||||| |||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||    
T  30954671 catcataaatcaaaatccataattaacacaacgggataattcgttaactccaaattaaatataataagtttaggatctcatcatccaagcaaaattaaat 30954572  T
Q  105 tataatttcaaaaatcaactccaatnnnnnnnga-tagttgacacaacatcccaaccctagtgttacagaatcagagcccgtattcgtctacatagttct 203  Q
    |||||||||||||||||||||||||        | ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30954571 tataatttcaaaaatcaactccaataaaagaaaaatagttgacaaaacatcccaaccccagtgttacagaatcagagcccgtattcgtctacatagttct 30954472  T
Q  204 aaaaaataattaaaaacggaagaaaatcttccaacgtcaccttccagataccccacaactagagctcctcaaccagattgtacccccacgagt 296  Q
     ||||||||||||| || ||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |  |||||||||||||||    
T  30954471 caaaaataattaaagactgaagaaaatcttccaacgtcaccttccagataccccgtaactagagctcctcaacctgtatgtacccccacgagt 30954379  T

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