View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_52 (Length: 311)
Name: NF17260_high_52
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 6 - 126
Target Start/End: Complemental strand, 40387940 - 40387820
Alignment:
| Q |
6 |
tacaatttggtaattctattaacttacaagaggtaattcaatcctgtaataaatgaggcaattcaatatagttacaagagagactatcaaggaaaaatat |
105 |
Q |
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| T |
40387940 |
tacaatttggtaaatctgttaacttacaagaggtaattcaatcctgtaataaaagaggcaattcaatctagttacaagagagactataaaggaaaaatat |
40387841 |
T |
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| Q |
106 |
acaatttacaaagcaaattta |
126 |
Q |
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| T |
40387840 |
acaatttacaaagcaaattta |
40387820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 298
Target Start/End: Complemental strand, 40334568 - 40334435
Alignment:
| Q |
173 |
aaggaccatcgttagattgttccaaaatccaaaaacaattgcagagcaaatcaattttgaatatgattgacatcttctatcta-gt-------ctaaatc |
264 |
Q |
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| T |
40334568 |
aaggaccactgttggatcgttccaaaatccaaaaacgattgccaagcaaatcaattttcaatatgattggcatcttctatctacgtatctaacccaaatc |
40334469 |
T |
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| Q |
265 |
tatatgcttgttatttgcaaacaacttttaatat |
298 |
Q |
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| T |
40334468 |
tatatgctttgtatttgcaaacgacttttaatat |
40334435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 40377980 - 40377897
Alignment:
| Q |
9 |
aatttggtaattctattaacttacaagaggtaattcaatcctgtaat--aaatgaggcaattcaatatagttacaagagagact |
90 |
Q |
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| T |
40377980 |
aatttggtaaatctattaacttacaagagggaattcaatcatgtaataaaaaagaggcaatttaatctggttgcaagagagact |
40377897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Complemental strand, 40334641 - 40334596
Alignment:
| Q |
81 |
aagagagactatcaaggaaaaatatacaatttacaaagcaaattta |
126 |
Q |
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| T |
40334641 |
aagagagactacaaaggaaaaatacacaacttacaaagcaaattta |
40334596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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