View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_54 (Length: 304)
Name: NF17260_high_54
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_54 |
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| [»] scaffold0066 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 21 - 292
Target Start/End: Original strand, 23744422 - 23744688
Alignment:
| Q |
21 |
aactgatgtaataggtagaatggaatacacaacatcagataagaatagaggtgcaagagtaggcagaaaattacctaagatccaataatctataccaagt |
120 |
Q |
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| T |
23744422 |
aactgatgtaacaggtagaatggaatacacaacatcagataagaa-----gtgctagagtaggcagaaaaatacctaagatccaattatctatacaaagt |
23744516 |
T |
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| Q |
121 |
ttgttgtaatccaaccaagttttgaattacttcagaaatggtaggttctctttcaaccataagatttccataagaatgtacatgagaatgtacaggagat |
220 |
Q |
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| T |
23744517 |
ttgttgtaatccaaccaagttttgaattatatcagaaatggtaggtcctctttcaaccataagatttccataagtaggaacatgagaatgtacaggaggt |
23744616 |
T |
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| Q |
221 |
accttaggacgaccatcagagttagatgattttgtgttagaaaaagatgcatcaaaaagagggcgaagatgg |
292 |
Q |
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| T |
23744617 |
accttaggacgaccgtcagagttagatgagtttgtgttagaaaaagatgcatcaaaaagatggcgaagatgg |
23744688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0066 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: scaffold0066
Description:
Target: scaffold0066; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 21 - 292
Target Start/End: Original strand, 631 - 905
Alignment:
| Q |
21 |
aactgatgtaataggtagaatggaatacacaacatcagataagaatagag---gtgcaagagtaggcagaaaattacctaagatccaataatctatacca |
117 |
Q |
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| T |
631 |
aactgttgtaacaggcacaatgggatactcaacatcagataagaatggagcaggtgcaacagtaggcagaaaattacctgggatccaataatctatacca |
730 |
T |
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| Q |
118 |
agtttgttgtaatccaaccaagttttgaattacttcagaaatggtaggttctctttcaaccataagatttccataagaatgtacatgagaatgtacagga |
217 |
Q |
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| T |
731 |
agtttgttgtaatccaaccaagttttgaattacttcataaatggtaggtcctctttcaaccataagatttacataagtaggaacatgagaatgtacagga |
830 |
T |
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| Q |
218 |
gataccttaggacgaccatcagagttagatgattttgtgttagaaaaagatgcatcaaaaagagggcgaagatgg |
292 |
Q |
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| T |
831 |
ggaaccttaggacgaccatcagagttagatgattttgtgttagaaaaagatgcatcaaaaagagggcgaagatgg |
905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 118 - 292
Target Start/End: Original strand, 21080026 - 21080200
Alignment:
| Q |
118 |
agtttgttgtaatccaaccaagttttgaattacttcagaaatggtaggttctctttcaaccataagatttccataagaatgtacatgagaatgtacagga |
217 |
Q |
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| T |
21080026 |
agtttgttgtaattcaaccaagttttgaatcacatcataaatggtaggtcctctttcaaccataatatttccagaagtaggaacatgagaatgtacagga |
21080125 |
T |
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| Q |
218 |
gataccttaggacgaccatcagagttagatgattttgtgttagaaaaagatgcatcaaaaagagggcgaagatgg |
292 |
Q |
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| T |
21080126 |
ggtaccttaggacgaccatcagagttagatgagtttgtgttagaaaaagatgcatcaaaaagagggcgaagatgg |
21080200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 21079892 - 21079941
Alignment:
| Q |
21 |
aactgatgtaataggtagaatggaatacacaacatcagataagaatagag |
70 |
Q |
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| T |
21079892 |
aactgatgtaacaggtagaatggaatacacaacattagataagaatagag |
21079941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 24318823 - 24318980
Alignment:
| Q |
118 |
agtttgttgtaatccaaccaagttttgaattacttcagaaatggtaggttctctttcaaccataagatttccataagaatgtacatgagaatgtacagga |
217 |
Q |
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| T |
24318823 |
agtttgttgtaacccaatcaagtttagaatcacatcagtaatggtagttcctctttcaaccataggatttccagaattaggagcatcaagattcatagaa |
24318922 |
T |
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| Q |
218 |
gataccttaggacgaccatcagagttagatgattttgtgttagaaaaagatgcatcaa |
275 |
Q |
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| T |
24318923 |
ggttccttaggacgaccatcacagttagatgtattagtgttagcaaaagatgcatcaa |
24318980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 190
Target Start/End: Complemental strand, 24317591 - 24317520
Alignment:
| Q |
119 |
gtttgttgtaatccaaccaagttttgaattacttcagaaatggtaggttctctttcaaccataagatttcca |
190 |
Q |
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| T |
24317591 |
gtttgttgtaacccaatcaagtttagaatcacatcagcaatggtatgtcctctttcaaccataggatttcca |
24317520 |
T |
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