View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_56 (Length: 297)
Name: NF17260_high_56
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_56 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 47304454 - 47304318
Alignment:
| Q |
18 |
ctctaaagaattgagttttaagatctcaaaagttttattggtaatgaagattgaaattaaaataatccatccttatagatataggaagatggagaagaaa |
117 |
Q |
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| T |
47304454 |
ctctaaagaattgagttttaagaactcaaaagttttattggtaatgaagattgaaattaaaataatccatccttatagatataggaagatggagaagaaa |
47304355 |
T |
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| Q |
118 |
ataatattttctccatttcaaaacgaatgttgcttta |
154 |
Q |
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| T |
47304354 |
ataatattttctccatttcaaaacgaatatcgcttta |
47304318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 31 - 143
Target Start/End: Complemental strand, 47283206 - 47283093
Alignment:
| Q |
31 |
agttttaagatctcaaaagttttattggtaatgaagattgaaattaaaataatccatccttatagatataggaagatggagaagaaaataata-ttttct |
129 |
Q |
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| T |
47283206 |
agttttaggaactcaaacggtttattggtaatgaagattgaaattaaaatattccatccttatagatacaaggagatgaagaagaaaataacacatttct |
47283107 |
T |
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| Q |
130 |
ccatttcaaaacga |
143 |
Q |
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| T |
47283106 |
ccatttcaaaacga |
47283093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 47284218 - 47284135
Alignment:
| Q |
19 |
tctaaagaattgagttttaagatctcaaaagttttattggtaatgaagattgaaattaaaataatccatccttatagatatagg |
102 |
Q |
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| T |
47284218 |
tctaaacaattgagttttatgaacccaaatggtgtattggggatgaagattgaaattgaaataatccatccttaaaaatatagg |
47284135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 47305836 - 47305788
Alignment:
| Q |
44 |
caaaagttttattggtaatgaagattgaaattaaaataatccatcctta |
92 |
Q |
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| T |
47305836 |
caaaaggtgtattggaaatgaagattgaaattaaaataatacatcctta |
47305788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 224
Target Start/End: Complemental strand, 30354584 - 30354541
Alignment:
| Q |
181 |
tttctccaaaattttgtttgtttgttttaaaaggtataatggcg |
224 |
Q |
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| T |
30354584 |
tttctccaaaattgtgtttgtttgttctaaaaagtataatggcg |
30354541 |
T |
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