View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_6 (Length: 680)
Name: NF17260_high_6
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 119 - 513
Target Start/End: Complemental strand, 39693053 - 39692659
Alignment:
| Q |
119 |
agtgtgagaacacaatgattcgtggcaataacacgagaagccaagtgcttatgctggaatggtgtttggatttcgtttgtttgtgaggaagaagaaaagg |
218 |
Q |
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| T |
39693053 |
agtgtgagaacacaatgattcgtggcaataacacgagaagccaagtgcttatgctggaatggtgtttggatttcgtttgttagcgaggaagaagaaaagg |
39692954 |
T |
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| Q |
219 |
acaatattgaatgggaccaaacagttgcatgcgtggcacttgtaacacagattcgggaaaattcgatgagttcttggaatcttgagtactagcgcgtatg |
318 |
Q |
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| T |
39692953 |
acaattttgaatgggaccaaacagttgcatgcgtggcacttgtaacacagattcgggaaaattcgatgagttattggaatcttgagtactagcgcgtatg |
39692854 |
T |
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| Q |
319 |
tgcacgctcaaatgttactgg-ttactag-ttattcagtgtggacaattgtcacgtacatgccacgtggtatgattttgataataaagttgtgaagagat |
416 |
Q |
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| T |
39692853 |
tgcacgctcaaatgttactggtttactagtttattcagtgtggacaattgtcacgtacgtgccacgttgtatgattttgatgataaagttgtga--agat |
39692756 |
T |
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| Q |
417 |
tgactcggtctaggtgaacagaacaaccagatgaaatgccaagtaggaccttcaccatgggccacttatatattattggtccaaaatacactgtaag |
513 |
Q |
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| T |
39692755 |
tgactcggtctaggtgaacagaacaaccagatgaaatgccaagtaggaccttcaccatgggccacttatatattattggtccaaaatacagtgtaag |
39692659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 519 - 666
Target Start/End: Complemental strand, 39692082 - 39691935
Alignment:
| Q |
519 |
tgatttatactctctcattcacatactaataagtttcattttagttactccnnnnnnnnnnnncgggttcattctagtgtccctnnnnnnngggtttcat |
618 |
Q |
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| T |
39692082 |
tgatttatactctctcattcacatactaataagtttcattttagttactccaaaaacaaaaaacgggttcattttagtgtccctaaaaaaagggtttcat |
39691983 |
T |
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| Q |
619 |
tttagtgaaaaatataataattttgttttaccgttcaatattgtatgt |
666 |
Q |
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| T |
39691982 |
tttagtgaaaaatataataattttgttttaccgttcaatattgtatgt |
39691935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 39693122 - 39693062
Alignment:
| Q |
19 |
taagttacatgaggaggcatgtatggtgaagagttgaaggattaagaacatactgattact |
79 |
Q |
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| T |
39693122 |
taagttacatgaggaggcatgtatggtgaagagttgaaggattaagaacatactgattact |
39693062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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