View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_60 (Length: 283)
Name: NF17260_high_60
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_60 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 18227545 - 18227298
Alignment:
| Q |
16 |
catatttgacatgcaacaatttgtgctcgtagcgtacttgataaaatagtatcggaaagatcttcctcttct-gatctagggtgcttgtcttttgtgcat |
114 |
Q |
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| T |
18227545 |
catatttgacatgcaacaatttgtgctcgtaggatacttgataaaatagcatcggaaagatctttctcttcttgatctagggtgcttgtcttttgtgcat |
18227446 |
T |
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| Q |
115 |
aaagtacctcttatgcttttctagacttataagttaaattttctttgtacttttgtcattatttattaaattttgatgttaaaaattatacaaataagtt |
214 |
Q |
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| T |
18227445 |
aaagtacctcttatgtttttctagacttataagttaaattttctttgtacttttctcattatttattaaattttgatgttaaaaa-aatacaaataagtt |
18227347 |
T |
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| Q |
215 |
ctaattactttgaatggtaggccaattcactttcttgaagcgaaacttt |
263 |
Q |
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| T |
18227346 |
ataattactttgaatggtaggccaattcactttcttgaagcgaaacttt |
18227298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 18254271 - 18254088
Alignment:
| Q |
18 |
tatttgacatgcaacaatttgtgctcgtagcgtacttgataaa--atagtatcggaaagatcttcctcttct-gatctagggtgcttgtcttttgtgcat |
114 |
Q |
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||||| |||||||||||| |||||| |||| || ||||||||| | |||||||||||| ||||||||| || ||| ||| ||||||||||||||||||| |
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| T |
18254271 |
tattttacatgcaacaatatgtgcttgtagggtgcttgataaagaaaagtatcggaaaggtcttcctctacttgatgtagagtgcttgtcttttgtgcat |
18254172 |
T |
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| Q |
115 |
aaagtacctcttatgcttttctagacttataagttaaattttctttgtacttttgtcattatttattaaattttgatgttaaaaa |
199 |
Q |
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| T |
18254171 |
aaaataccccttgtatttttctcgac-tcggggttaagtactctttgtacttttctcattatttatttaattttgatgttaaaaa |
18254088 |
T |
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