View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_63 (Length: 273)
Name: NF17260_high_63
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_63 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 33 - 273
Target Start/End: Complemental strand, 34743346 - 34743107
Alignment:
| Q |
33 |
ctctcaattccaccttgcatacatgttagattaagcaaatctaatacatgtgcactcattaatcggttcaaaatacattattgtctgtaaaattgaatag |
132 |
Q |
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| T |
34743346 |
ctctcaattccaccttgcatacatgttagattaagcaaatccaatacatgtgcactcattaatcggttcaaaatacattattgtctgtaaaattgaatag |
34743247 |
T |
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| Q |
133 |
atagaacacaacnnnnnnnnnactctcatggtacttattgatgaaatataagaaaagaaaacctttcttacatnnnnnnnggttgagattaagcatgcaa |
232 |
Q |
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| T |
34743246 |
atagaacacaactttttttttactctcatggtacttatcgatgaaatataagaaaagaaaacctttcttacat-aaaaaaggttgagattaagcatacaa |
34743148 |
T |
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| Q |
233 |
gtgatggtggatcaattggaaaaatatcacaggaataagaa |
273 |
Q |
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| T |
34743147 |
ttgatggtggatcaattggaaaaatatcacaggaataagaa |
34743107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 51 - 205
Target Start/End: Original strand, 29549858 - 29550010
Alignment:
| Q |
51 |
atacatgttagattaagcaaatctaatacatgtgcactcattaatcggttcaaaatacattattgtctgtaaaattgaatagatagaacacaacnnnnnn |
150 |
Q |
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| T |
29549858 |
atacatggtagattaagcaaatccaaaacatttgaactcattcatcggttcaaaatacattgttgtgcatcaaatataatagatagaacacca---aatt |
29549954 |
T |
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| Q |
151 |
nnnactctcatggtacttattgatgaaatataagaaaagaaa-acctttcttacat |
205 |
Q |
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| T |
29549955 |
tttactctcatggtgctcaatgatgaaatataagaaaagaaacacatttcttacat |
29550010 |
T |
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