View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_68 (Length: 266)
Name: NF17260_high_68
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_68 |
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Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 26656388 - 26656135
Alignment:
| Q |
1 |
ttcacatgcctattcaccaaacaataattactaattatgcattcaaacacaaaacaaactcaaatttcaaactaaaagtgacgaaactacataatttcac |
100 |
Q |
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| T |
26656388 |
ttcacatgcctattcaccaaacaataattactaattatgcattcaaacacaaaacaaactcaaaattcaaactaaaagtgacgaaactacataatttcac |
26656289 |
T |
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| Q |
101 |
atcacaattttatattatcattgataattgattcaaaataagtaggtttcagaaaaaattaatttcagataagctaaatcgtgaattacacattatcaca |
200 |
Q |
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| T |
26656288 |
atcacaattttatattatcattgataattgattcaaaataagtaggtttcagaaaaaattaatttcagataagctaaatcgtgaattacacattatcaca |
26656189 |
T |
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| Q |
201 |
aacacgaggaatgcataattcgttacctttactgcaactgcatgaaaaccgttc |
254 |
Q |
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| T |
26656188 |
aacacgaggaatgcgtaattcgttacctttactgaaacttcatgaaaaccgttc |
26656135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 26642919 - 26642836
Alignment:
| Q |
1 |
ttcacatgcctattcaccaaacaataattactaattatgcattcaaacacaaaacaaactcaaatttcaaactaaaagtgacgaaa |
86 |
Q |
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| T |
26642919 |
ttcacatgcctattcaccaaacagtaattgctaattaagcatccaaacac--aagaaattcaaatttcaaactaaaagtgacgaaa |
26642836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 26642783 - 26642699
Alignment:
| Q |
170 |
taagctaaatcgtgaattacacattatcacaaacacgaggaatgcataattcgttacctttactgcaactgcatgaaaaccgttc |
254 |
Q |
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| T |
26642783 |
taagctaaatctcgaattgcacattatcacaaacacaatacacgcatatttcgttacctttactgcaactgcatgaaaaccgttc |
26642699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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