View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_74 (Length: 252)
Name: NF17260_high_74
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_74 |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 71 - 238
Target Start/End: Complemental strand, 33708304 - 33708138
Alignment:
| Q |
71 |
cggtgatcaaatagatggatatgccaccaaattatccaaagagaagggataattgattttaaaactaacttttctcttaaccaaaacatgaatcttttga |
170 |
Q |
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| T |
33708304 |
cggtgatcaaatagatggatatgccaccatattatccaaagagaagggatatttgattttaaaactaacttttctcttaaccaaaacatgaatcttttga |
33708205 |
T |
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| Q |
171 |
accataccttctctataaatgtgtctaaatcctctattatggtgactataaaatatctcccagaatta |
238 |
Q |
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| T |
33708204 |
accataccttctctataaatgtgtct-aatcctctattatggtgactataaaatatctctcagaatta |
33708138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 21175746 - 21175604
Alignment:
| Q |
76 |
atcaaatagatggatatgccaccaaattatccaaagagaagggataattgattttaaaactaacttttctcttaaccaaaacatgaatcttttgaaccat |
175 |
Q |
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|||||||||| |||| ||||||| |||||||| ||||| || |||| || || |||||||||| |||||||||| |||||||||||| |||||||||| |
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| T |
21175746 |
atcaaatagaaggatttgccacctaattatccgaagaggagtgatatttttttgtaaaactaacatttctcttaagcaaaacatgaattctttgaaccat |
21175647 |
T |
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| Q |
176 |
accttctctataaatgtgtctaaatcctctattatggtgactat |
219 |
Q |
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| T |
21175646 |
-tcaactctttaaatttgtctaaatcctctattatggagactat |
21175604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 21220855 - 21220796
Alignment:
| Q |
118 |
gataattgattttaaaactaacttttctcttaaccaaaacatgaatcttttgaaccatac |
177 |
Q |
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|||| |||||| | ||||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
21220855 |
gatatttgattgtgaaactaactgttctcttaaccaaaacatgaatcctttgaaccatac |
21220796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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