View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_89 (Length: 239)
Name: NF17260_high_89
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_89 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 239
Target Start/End: Original strand, 42493685 - 42493898
Alignment:
| Q |
26 |
tatctggatgatattgtttttgctcgtgacgagcattctgaaactcaacttgttaagtcccatctggataagaatttcataatcataggtttaggcacac |
125 |
Q |
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| T |
42493685 |
tatctggatgatattgtttttgctcgtgacgatcattctgaaactcaacttgttaagtcccatctggataagaatttcataatcataggtttaggcacac |
42493784 |
T |
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| Q |
126 |
tccattatgtcggggtcaaaattgcttaatcagagagttaaattcttgatgatcagtgcaaatatactactgagttgcttgaaggaagtggtcagctggc |
225 |
Q |
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| T |
42493785 |
tccattatgtcggggtcaaaattgcttaatcagagagttaaattattgatgatcagtgcaaatatactattgagttgcttgaagaaagtggtcagctagc |
42493884 |
T |
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| Q |
226 |
taggtatgaaacct |
239 |
Q |
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|||| ||||||||| |
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| T |
42493885 |
taggcatgaaacct |
42493898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 26 - 239
Target Start/End: Original strand, 42495875 - 42496079
Alignment:
| Q |
26 |
tatctggatgatattgtttttgctcgtgacgagcattctgaaactcaacttgttaagtcccatctggataagaatttcataatcataggtttaggcacac |
125 |
Q |
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|||||||||| ||||||||| ||| ||||||| ||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||| |
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| T |
42495875 |
tatctggatgttattgttttggctagtgacgatcattctgaaacccaactt--------ccatctggataagaatttcgcaatcataggtttaggcacac |
42495966 |
T |
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| Q |
126 |
tccattatgtcggggtcaaaattgcttaatcagagagttaaattcttgatgatcagtgcaa----atatactactgagttgcttgaaggaagt-ggtcag |
220 |
Q |
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| T |
42495967 |
taaattatgtcggggtctaaattgctt------agagttaaattcttgatattcacggcaaatatatatactattgagttgcttgaagaaagtgggtcag |
42496060 |
T |
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| Q |
221 |
ctggctaggtatgaaacct |
239 |
Q |
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| T |
42496061 |
ctagctagacatgaaacct |
42496079 |
T |
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