View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17260_high_90 (Length: 238)
Name: NF17260_high_90
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_90 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 3968240 - 3968005
Alignment:
| Q |
1 |
ttttatatgcatcactcacccacgagcttaatttattcctccaattatgctttttacttatggtggatactcaaacttaaagaacaagtgtgggagcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
3968240 |
ttttatatgcatcactcacccacgagcttaatttattcctccaattatgctttttacttatggtggatactcaaacttaaagaacaagtgtgtgagcaag |
3968141 |
T |
|
| Q |
101 |
acagtattggattaaactagaat---------------ggaaacgtggtccctagtgtgaaaatgagagtataattcagaacttcagccatggatatgaa |
185 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3968140 |
acagtattggattaaactagaatggaaggtgccagaatggaaacgtggtccctagtgtgaaaatgagagtataattcagaacttcagccatggatatgaa |
3968041 |
T |
|
| Q |
186 |
agataccaccaaaaacttgctatgagaattatttcc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
3968040 |
agataccaccaaaaacttgctatgagaattatttcc |
3968005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University