View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_high_92 (Length: 236)

Name: NF17260_high_92
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_high_92
NF17260_high_92
[»] chr3 (5 HSPs)
chr3 (1-221)||(13431602-13431822)
chr3 (52-156)||(21542461-21542565)
chr3 (34-158)||(24793231-24793354)
chr3 (116-181)||(11044669-11044733)
chr3 (119-155)||(29709533-29709569)
[»] chr2 (4 HSPs)
chr2 (52-180)||(40409214-40409341)
chr2 (51-158)||(22908965-22909072)
chr2 (34-158)||(22901866-22901989)
chr2 (34-129)||(23721722-23721816)
[»] chr7 (9 HSPs)
chr7 (53-181)||(33090952-33091079)
chr7 (52-158)||(41027324-41027430)
chr7 (34-158)||(42595137-42595260)
chr7 (51-158)||(13285966-13286073)
chr7 (34-181)||(15988834-15988979)
chr7 (51-158)||(12827540-12827647)
chr7 (52-158)||(40701707-40701813)
chr7 (51-156)||(2992088-2992193)
chr7 (51-158)||(31824502-31824609)
[»] chr8 (7 HSPs)
chr8 (56-158)||(18536373-18536475)
chr8 (52-143)||(37816656-37816748)
chr8 (51-181)||(14437133-14437262)
chr8 (52-158)||(5867563-5867669)
chr8 (120-181)||(12841748-12841808)
chr8 (51-156)||(17268625-17268730)
chr8 (53-158)||(37295658-37295763)
[»] chr5 (2 HSPs)
chr5 (50-158)||(36316142-36316250)
chr5 (34-158)||(19548634-19548757)
[»] chr1 (7 HSPs)
chr1 (51-158)||(52955470-52955577)
chr1 (51-157)||(34822808-34822914)
chr1 (34-158)||(1989654-1989777)
chr1 (49-156)||(2370577-2370684)
chr1 (51-157)||(1186592-1186698)
chr1 (51-156)||(18383145-18383250)
chr1 (34-158)||(1982236-1982359)
[»] chr4 (6 HSPs)
chr4 (49-158)||(30651341-30651450)
chr4 (51-158)||(26458128-26458235)
chr4 (51-156)||(13793239-13793344)
chr4 (51-158)||(17421503-17421610)
chr4 (51-157)||(6406003-6406109)
chr4 (51-156)||(9836239-9836344)
[»] chr6 (5 HSPs)
chr6 (34-158)||(8563406-8563529)
chr6 (51-158)||(22223772-22223879)
chr6 (51-158)||(22249607-22249714)
chr6 (116-158)||(9761692-9761734)
chr6 (51-156)||(27787740-27787845)
[»] scaffold0059 (1 HSPs)
scaffold0059 (34-158)||(40757-40880)
[»] scaffold0004 (1 HSPs)
scaffold0004 (35-158)||(241850-241971)
[»] scaffold0535 (1 HSPs)
scaffold0535 (51-158)||(1101-1208)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13431602 - 13431822
Alignment:
Q  1 catgtagctggaatgaatttcctgaacttcagagacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  13431602 catgtagctggaatgaatttcctgaacttcagagacttcataatgtacctttttgtttcacttaagatgatttgtaagacccttatttgatataatcaag 13431701  T
Q  101 ttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatgatattctttgatgcaatatttttaatgttttcctcttaggattcaatatc 200  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||    
T  13431702 ttctaataatgaaatatcaatgaagtgcagtatgtgtaacatataggatgatattctttgatgtaatatttgtaatgttttcctcttaggattcaatatc 13431801  T
Q  201 acacacacaacgggtgcatat 221  Q
    |||||||||||||||||||||    
T  13431802 acacacacaacgggtgcatat 13431822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 156
Target Start/End: Original strand, 21542461 - 21542565
Alignment:
Q  52 tttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatga 151  Q
    ||||||||| ||| ||| |||| |||||| || |||| || ||||||| | ||| |  || || ||||||||| || |||||||||||||||||||||||    
T  21542461 tttgtttcacttaggattatttgtaagactctcatttaatgtaatcaaatcctagtagtgtaacatcaatgaaatgtagtatgtgtaacatctaggatga 21542560  T
Q  152 tattc 156  Q
    |||||    
T  21542561 tattc 21542565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 24793354 - 24793231
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtat 133  Q
    ||||||| ||||| |||||| |||||| ||| ||||||||  ||||| |||||||||| ||||||| | |||||  ||||| ||  ||||||||||| ||    
T  24793354 gacttcagaatgttcctttt-gtttcacttaggatgatttgcaagactcttatttgatgtaatcaaatcctaatagtgaaacatttatgaagtgcagcat 24793256  T
Q  134 gtgtaacatctaggatgatattctt 158  Q
        |||||||||||||||||||||    
T  24793255 agaaaacatctaggatgatattctt 24793231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 181
Target Start/End: Original strand, 11044669 - 11044733
Alignment:
Q  116 atcaatgaagtgcagtatgtgtaacatctaggatgatattctttgatgcaatatttttaatgtttt 181  Q
    |||||||||||| ||||||  ||||||||||||||||| |||| || | ||||||| |||||||||    
T  11044669 atcaatgaagtgtagtatgcataacatctaggatgatactcttagaag-aatatttctaatgtttt 11044733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 29709533 - 29709569
Alignment:
Q  119 aatgaagtgcagtatgtgtaacatctaggatgatatt 155  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  29709533 aatgaagtgcaatatgtataacatctaggatgatatt 29709569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 52 - 180
Target Start/End: Original strand, 40409214 - 40409341
Alignment:
Q  52 tttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatga 151  Q
    ||||||||| ||| || ||||| |||||| || ||||||| |||||||  ||||||  ||||| |||||||||||| |||||||||||||||||||||||    
T  40409214 tttgtttcacttaggaagatttgtaagactctcatttgatgtaatcaaactctaatagtgaaacatcaatgaagtgtagtatgtgtaacatctaggatga 40409313  T
Q  152 tattctttgatgcaatatttttaatgttt 180  Q
    ||||| |||||| ||||||  ||||||||    
T  40409314 tattc-ttgatggaatattcctaatgttt 40409341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 22908965 - 22909072
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| |||||| |||||||||| ||||||| | ||||| |||||| ||  |||||||| || |||   |||||||||||||    
T  22908965 ttttgtttcacttaggatgatttgtaagactcttatttgatgtaatcaaatcctaataatgaaacatttatgaagtggagcatggaaaacatctaggatg 22909064  T
Q  151 atattctt 158  Q
    ||||||||    
T  22909065 atattctt 22909072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 22901989 - 22901866
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtat 133  Q
    ||||||| ||||| |||||| |||||| ||| |||||||| |||||| |||||||||| ||||||| | |||||  ||||| ||  ||||||||||  ||    
T  22901989 gacttcagaatgttcctttt-gtttcagttaggatgatttgtaagactcttatttgatgtaatcaaatcctaatagtgaaacatttatgaagtgcaacat 22901891  T
Q  134 gtgtaacatctaggatgatattctt 158  Q
    |   |||||||||||||||||||||    
T  22901890 ggaaaacatctaggatgatattctt 22901866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 23721816 - 23721722
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgca 129  Q
    ||||||||||||| || |||||||||| ||| |||||||| |||||| |||||||||| ||||||| | |||||  ||||| ||  ||||||||||    
T  23721816 gacttcataatgttcc-ttttgtttcacttaggatgatttgtaagactcttatttgatgtaatcaaatcctaatagtgaaacatttatgaagtgca 23721722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 33091079 - 33090952
Alignment:
Q  53 ttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatgat 152  Q
    |||||||| ||| |||||||| |||||| || ||||||| ||||||| | |||||  ||||| ||  |||||||||||||| ||||||||||||||||||    
T  33091079 ttgtttcacttaggatgatttgtaagactctcatttgatgtaatcaaatcctaatagtgaaacattgatgaagtgcagtatatgtaacatctaggatgat 33090980  T
Q  153 attctttgatgcaatatttttaatgtttt 181  Q
    |||| |||||  ||||||| |||||||||    
T  33090979 attc-ttgatagaatatttataatgtttt 33090952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 41027430 - 41027324
Alignment:
Q  52 tttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatga 151  Q
    ||||||||| ||| |||||||| |||||| |||||||||| ||||||| | |||||  ||||||||  ||||||||||| |||   ||||||||||||||    
T  41027430 tttgtttcacttaggatgatttgtaagactcttatttgatgtaatcaaatcctaatagtgaaatatttatgaagtgcagcatggaaaacatctaggatga 41027331  T
Q  152 tattctt 158  Q
    |||||||    
T  41027330 tattctt 41027324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 42595260 - 42595137
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtat 133  Q
    ||||||| ||||| |||||| |||||| ||| |||||||| |||||| |||| ||||| ||||||| | |||||  ||||| ||  ||||||||||||||    
T  42595260 gacttcagaatgttcctttt-gtttcacttaggatgatttgtaagactcttaattgatgtaatcaaatcctaatagtgaaacatttatgaagtgcagtat 42595162  T
Q  134 gtgtaacatctaggatgatattctt 158  Q
    |   |||||||||||||||||||||    
T  42595161 ggaaaacatctaggatgatattctt 42595137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 13285966 - 13286073
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| |||||| |||||||||| ||||||| | |||||  ||||| ||  ||||||||||| |||   |||||||||||||    
T  13285966 ttttgtttcacttaggatgatttgtaagactcttatttgatgtaatcaaatcctaatagtgaaacatttatgaagtgcagcatggaaaacatctaggatg 13286065  T
Q  151 atattctt 158  Q
    ||||||||    
T  13286066 atattctt 13286073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 181
Target Start/End: Original strand, 15988834 - 15988979
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtat 133  Q
    ||||||| ||||| |||||| |||||| ||| |||||||| ||||||  ||||||||| ||||||| | |||||  ||||| ||  ||||||||||| ||    
T  15988834 gacttcagaatgttcctttt-gtttcacttaggatgatttgtaagactgttatttgatgtaatcaaatcctaatagtgaaacattgatgaagtgcagcat 15988932  T
Q  134 gtgtaacatctaggatgatattctttgatgcaatatttttaatgtttt 181  Q
    |   ||||||||||||||||||| |||||| ||||||  |||||||||    
T  15988933 ggaaaacatctaggatgatattc-ttgatggaatattcctaatgtttt 15988979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 12827540 - 12827647
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| |||||| |||||||||| ||||||| | |||||  ||||| ||  ||||||||||  |||   |||||||||||||    
T  12827540 ttttgtttcacttaggatgatttgtaagactcttatttgatgtaatcaaatcctaatagtgaaacattgatgaagtgcaacatggaaaacatctaggatg 12827639  T
Q  151 atattctt 158  Q
    ||||||||    
T  12827640 atattctt 12827647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 40701813 - 40701707
Alignment:
Q  52 tttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatga 151  Q
    ||||||||| ||| ||| |||| ||||||    ||||||| ||||||| | ||||| |||||| |||| ||||||||||| ||| |||||||||| ||||    
T  40701813 tttgtttcacttaggataatttgtaagactaccatttgatgtaatcaaatcctaataatgaaacatcattgaagtgcagtgtgtataacatctagaatga 40701714  T
Q  152 tattctt 158  Q
    |||||||    
T  40701713 tattctt 40701707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 2992088 - 2992193
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||||||| |||||||| ||||||    ||||||| ||||||| | |||||  ||||| | |||||||| | |||   ||||||||||||||||    
T  2992088 ttttgtttcatttaggatgatttctaagactaccatttgatgtaatcaaatcctaatagtgaaacaacaatgaagagaagtgattgtaacatctaggatg 2992187  T
Q  151 atattc 156  Q
    ||||||    
T  2992188 atattc 2992193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 31824609 - 31824502
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||   || ||||| ||||||| | |||||  ||||| ||  ||||||||||| |||   |||||||||||||    
T  31824609 ttttgtttcacttaggatgatttgtaagacttgtaattgatgtaatcaaatcctaatagtgaaacatttatgaagtgcagcatggaaaacatctaggatg 31824510  T
Q  151 atattctt 158  Q
    ||||||||    
T  31824509 atattctt 31824502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 158
Target Start/End: Complemental strand, 18536475 - 18536373
Alignment:
Q  56 tttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatgatatt 155  Q
    ||||| ||| |||||||| ||| || || ||||||| ||||||| |||||||  ||||| |||||||||||||| ||||| ||| |||||||||||||||    
T  18536475 tttcacttaggatgatttgtaaaactctcatttgatgtaatcaaattctaatagtgaaacatcaatgaagtgcactatgtataagatctaggatgatatt 18536376  T
Q  156 ctt 158  Q
    |||    
T  18536375 ctt 18536373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 143
Target Start/End: Complemental strand, 37816748 - 37816656
Alignment:
Q  52 tttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgca-gtatgtgtaacatc 143  Q
    ||||||||| ||| |||||||| |||||| || ||||||| ||||||| |||||||  ||||| |||||||||||||| ||||||| ||||||    
T  37816748 tttgtttcacttaggatgatttgtaagactctcatttgatgtaatcaaattctaatagtgaaacatcaatgaagtgcaggtatgtgaaacatc 37816656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 181
Target Start/End: Complemental strand, 14437262 - 14437133
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||   || ||||| ||||||| | |||||  ||||| ||  ||||||||||| |||   |||||||||||||    
T  14437262 ttttgtttcacttaggatgatttgtaagacttgtaattgatgtaatcaaatcctaatagtgaaacatttatgaagtgcagcatgaaaaacatctaggatg 14437163  T
Q  151 atattctttgatgcaatatttttaatgtttt 181  Q
    |||||| |||||| ||||||  |||||||||    
T  14437162 atattc-ttgatggaatattcctaatgtttt 14437133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 158
Target Start/End: Original strand, 5867563 - 5867669
Alignment:
Q  52 tttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatga 151  Q
    ||||| ||| ||| |||||||| |||||| || |||| || ||||||| | |||||  ||||| ||| |||||| ||| | | |||||| ||||||||||    
T  5867563 tttgtatcacttaggatgatttgtaagactctcatttaatgtaatcaaatcctaatagtgaaacatcgatgaagggcaatgtttgtaacgtctaggatga 5867662  T
Q  152 tattctt 158  Q
    |||||||    
T  5867663 tattctt 5867669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 181
Target Start/End: Original strand, 12841748 - 12841808
Alignment:
Q  120 atgaagtgcagtatgtgtaacatctaggatgatattctttgatgcaatatttttaatgtttt 181  Q
    |||||||||||||| |||||||||||| |||||| || |||||| ||||||  |||||||||    
T  12841748 atgaagtgcagtatatgtaacatctagcatgata-tccttgatggaatattcctaatgtttt 12841808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 17268730 - 17268625
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||    ||||||| ||||||| | ||||| |||||| | |||||||| |||||   |  |||||||||||||    
T  17268730 ttttgtttcacttaggatgatttgtaagactaccatttgatgtaatcaaatcctaataatgaaacaacaatgaagagcagtgacttcaacatctaggatg 17268631  T
Q  151 atattc 156  Q
    ||||||    
T  17268630 atattc 17268625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 158
Target Start/End: Complemental strand, 37295763 - 37295658
Alignment:
Q  53 ttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatgat 152  Q
    |||||||| ||| |||||||| ||||||    ||||||||||||||| | |||||  |||||  |  || |||||| || | ||||||||||||||||||    
T  37295763 ttgtttcacttaggatgatttgtaagactaccatttgatataatcaaatcctaatagtgaaacgttgataaagtgcggtgtatgtaacatctaggatgat 37295664  T
Q  153 attctt 158  Q
    ||||||    
T  37295663 attctt 37295658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 36316250 - 36316142
Alignment:
Q  50 tttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggat 149  Q
    ||||||||||| ||| |||||||| |||||| |||||||||| ||||||| | |||||  || || ||| ||||||||||| |||   ||||||||||||    
T  36316250 tttttgtttcacttaggatgatttgtaagactcttatttgatgtaatcaaatcctaatagtggaacatcgatgaagtgcagcatggaaaacatctaggat 36316151  T
Q  150 gatattctt 158  Q
    |||||||||    
T  36316150 gatattctt 36316142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 19548634 - 19548757
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtat 133  Q
    |||||||||||||  ||||| |||||| ||| |||||||| |||||| |||||||||| ||||||| | |||||  ||||| ||  ||||||||||  ||    
T  19548634 gacttcataatgtttctttt-gtttcacttaggatgatttgtaagactcttatttgatgtaatcaaatcctaatagtgaaacatttatgaagtgcaacat 19548732  T
Q  134 gtgtaacatctaggatgatattctt 158  Q
    |   |||||||||||||||||||||    
T  19548733 gaaaaacatctaggatgatattctt 19548757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 52955470 - 52955577
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| |||||| |||||||||| ||||||| |||||||  ||||| ||  |||||||||||  ||   |||||||||||||    
T  52955470 ttttgtttcacttaggatgatttgtaagactcttatttgatgtaatcaaattctaatagtgaaacatttatgaagtgcagcgtggaaaacatctaggatg 52955569  T
Q  151 atattctt 158  Q
    ||||||||    
T  52955570 atattctt 52955577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 34822914 - 34822808
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||  | ||||||| ||||||| | |||||  ||||| | |||||||||||||| | |||||||||||| |||    
T  34822914 ttttgtttcacttaggatgatttgtaagactatcatttgatgtaatcaaatcctaatagtgaaacaacaatgaagtgcagtgtttgtaacatctagtatg 34822815  T
Q  151 atattct 157  Q
    |||||||    
T  34822814 atattct 34822808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 1989654 - 1989777
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtat 133  Q
    |||||||||||||  ||||| |||||| ||| |||||||| ||||||   |||||||| ||||||| | |||||  ||||  ||  ||||||||||| ||    
T  1989654 gacttcataatgtttctttt-gtttcacttaggatgatttgtaagacttgtatttgatgtaatcaaatcctaatagtgaagcatttatgaagtgcagcat 1989752  T
Q  134 gtgtaacatctaggatgatattctt 158  Q
    |   |||||||||||||||||||||    
T  1989753 ggaaaacatctaggatgatattctt 1989777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 2370577 - 2370684
Alignment:
Q  49 ctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctagga 148  Q
    |||||||||||| ||| |||||||||||||||    ||||||| ||||||| | |||||  ||||| | |||||||| ||| |   | ||||||||||||    
T  2370577 ctttttgtttcacttatgatgatttataagactaccatttgatgtaatcaaatcctaatagtgaaaaaacaatgaagagcaatgattttaacatctagga 2370676  T
Q  149 tgatattc 156  Q
    ||||||||    
T  2370677 tgatattc 2370684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 1186592 - 1186698
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||    ||||||| ||||||| | |||||  ||||| | |||||||| ||||    ||||||||||||||||    
T  1186592 ttttgtttcacttatgatgatttgtaagacttccatttgatgtaatcaaatcctaatagtgaaacaacaatgaagagcagagattgtaacatctaggatg 1186691  T
Q  151 atattct 157  Q
    |||||||    
T  1186692 atattct 1186698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 156
Target Start/End: Complemental strand, 18383250 - 18383145
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||  | ||||||| |||| || | |||||  ||||| | |||||||| |||||   | ||||||||||||||    
T  18383250 ttttgtttcacttaggatgatttgtaagactatcatttgatgtaattaaatcctaatagtgaaacaacaatgaagagcagtgaatttaacatctaggatg 18383151  T
Q  151 atattc 156  Q
    ||||||    
T  18383150 atattc 18383145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 1982236 - 1982359
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtat 133  Q
    |||||||||||||  ||||| |||||| |||  ||||||| ||||||   |||||||| ||||||| | |||||  ||||  ||  ||||||||||| ||    
T  1982236 gacttcataatgtttctttt-gtttcacttagaatgatttgtaagacttgtatttgatgtaatcaaatcctaatagtgaagcatttatgaagtgcagcat 1982334  T
Q  134 gtgtaacatctaggatgatattctt 158  Q
    |   |||||||||||||||||||||    
T  1982335 ggaaaacatctaggatgatattctt 1982359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 30651450 - 30651341
Alignment:
Q  49 ctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctagga 148  Q
    |||||||||||| ||| |||||||| |||||| |||||||||| ||||||| |||||||   | || ||  ||||||||||| |||   |||||||||||    
T  30651450 ctttttgtttcacttaggatgatttgtaagactcttatttgatgtaatcaaattctaatagaggaacattgatgaagtgcagcatggaaaacatctagga 30651351  T
Q  149 tgatattctt 158  Q
    ||||||||||    
T  30651350 tgatattctt 30651341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 26458235 - 26458128
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| |||||| |||||||||| ||||||| | |||||  ||||| ||  ||||||||| | |||   |||||||||||||    
T  26458235 ttttgtttcacttaggatgatttgtaagactcttatttgatgtaatcaactcctaatagtgaaacatttatgaagtgctgcatggaaaacatctaggatg 26458136  T
Q  151 atattctt 158  Q
    ||||||||    
T  26458135 atattctt 26458128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 13793239 - 13793344
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||||||| |||||||| ||||||    ||||||| ||||||| | |||||  ||||| | |||||||| |||||   ||||||||||||||||    
T  13793239 ttttgtttcatttaggatgatttgtaagactaccatttgatgtaatcaaatcctaatagtgaaacaacaatgaagagcagtgattgtaacatctaggatg 13793338  T
Q  151 atattc 156  Q
    ||||||    
T  13793339 atattc 13793344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 17421503 - 17421610
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||   || ||||| ||||||| | |||||  ||||| ||  ||||||||||| |||   |||||||||||||    
T  17421503 ttttgtttcacttaggatgatttgtaagacttgtaattgatgtaatcaattcctaatagtgaaacatttatgaagtgcagcatggaaaacatctaggatg 17421602  T
Q  151 atattctt 158  Q
    ||||||||    
T  17421603 atattctt 17421610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 157
Target Start/End: Original strand, 6406003 - 6406109
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||   |||||||| ||||||| |||||||  ||||| | ||||||||  || |   |||||||||||||| |    
T  6406003 ttttgtttcacttatgatgatttgtaagacttctatttgatgtaatcaaattctaatagtgaaacaacaatgaagatcaatgattgtaacatctaggaag 6406102  T
Q  151 atattct 157  Q
    |||||||    
T  6406103 atattct 6406109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 9836239 - 9836344
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||    ||||||||||||||| | |||||  ||||| | |||||||| |||||   |  |||||||||||||    
T  9836239 ttttgtttcacttaggatgatttgtaagactaccatttgatataatcaaatcctaatagtgaaacaacaatgaagagcagtgattaaaacatctaggatg 9836338  T
Q  151 atattc 156  Q
    ||||||    
T  9836339 atattc 9836344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 8563406 - 8563529
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtat 133  Q
    ||||||| ||||| |||||| |||||| ||| |||||||| |||||| |||| ||||| ||||||| | |||||  ||||| ||  ||||||||||| ||    
T  8563406 gacttcagaatgttcctttt-gtttcacttaggatgatttgtaagactcttaattgatgtaatcaaatcctaatattgaaacatttatgaagtgcagcat 8563504  T
Q  134 gtgtaacatctaggatgatattctt 158  Q
    |   |||||||||||||||||||||    
T  8563505 ggaaaacatctaggatgatattctt 8563529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 22223772 - 22223879
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||  ||| ||||| ||||||| | |||||  ||||| ||  ||||||||||| |||   |||||||||||||    
T  22223772 ttttgtttcacttaggatgatttgtaagacttttaattgatgtaatcaaatcctaatagtgaaacatttatgaagtgcagcatggaaaacatctaggatg 22223871  T
Q  151 atattctt 158  Q
    ||||||||    
T  22223872 atattctt 22223879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 22249607 - 22249714
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||  ||| ||||| ||||||| | |||||  ||||| ||  ||||||||||| |||   |||||||||||||    
T  22249607 ttttgtttcacttaggatgatttgtaagacttttaattgatgtaatcaaatcctaatagtgaaacatttatgaagtgcagcatggaaaacatctaggatg 22249706  T
Q  151 atattctt 158  Q
    ||||||||    
T  22249707 atattctt 22249714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 158
Target Start/End: Original strand, 9761692 - 9761734
Alignment:
Q  116 atcaatgaagtgcagtatgtgtaacatctaggatgatattctt 158  Q
    |||||||||||||||| ||| ||||||||||||||||||||||    
T  9761692 atcaatgaagtgcagtgtgtataacatctaggatgatattctt 9761734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 156
Target Start/End: Original strand, 27787740 - 27787845
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    |||||||||| ||| |||||||| ||||||    ||||||| ||||||  | |||||  ||||| | |||||||| |||||   ||||||||||||||||    
T  27787740 ttttgtttcacttaggatgatttgtaagactaccatttgatgtaatcatatcctaatagtgaaacaacaatgaagagcagtgattgtaacatctaggatg 27787839  T
Q  151 atattc 156  Q
    ||||||    
T  27787840 atattc 27787845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 158
Target Start/End: Original strand, 40757 - 40880
Alignment:
Q  34 gacttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtat 133  Q
    ||||||||||||| |||||| |||||| ||| |||||||| | |||| |  ||||||| |||  || |  | || ||||||||||||||||||||| |||    
T  40757 gacttcataatgttcctttt-gtttcacttaggatgatttgtgagactcccatttgatgtaaggaaatcttcataatgaaatatcaatgaagtgcaatat 40855  T
Q  134 gtgtaacatctaggatgatattctt 158  Q
    |   |||||||||||||||||||||    
T  40856 gaaaaacatctaggatgatattctt 40880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 158
Target Start/End: Original strand, 241850 - 241971
Alignment:
Q  35 acttcataatgtacctttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatg 134  Q
    |||||||||||| |||||  |||||| ||| |||||||| ||||||   |||||||| ||||||  | |||||  | | | |||||||||||| ||| ||    
T  241850 acttcataatgttccttt--gtttcacttaggatgatttgtaagacttctatttgatgtaatcagatcctaatagtaatacatcaatgaagtgtagtgtg 241947  T
Q  135 tgtaacatctaggatgatattctt 158  Q
    | ||||||||||||||||||||||    
T  241948 tataacatctaggatgatattctt 241971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0535 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 158
Target Start/End: Original strand, 1101 - 1208
Alignment:
Q  51 ttttgtttcatttaagatgatttataagacccttatttgatataatcaagttctaattatgaaatatcaatgaagtgcagtatgtgtaacatctaggatg 150  Q
    ||||| |||| ||| |||||||| |||||| |||||||||| ||||  |||  ||||  ||||| ||  ||||||||||| |||   |||||||||||||    
T  1101 ttttggttcacttaggatgatttgtaagactcttatttgatgtaattgagtcttaatagtgaaacattgatgaagtgcagcatggaaaacatctaggatg 1200  T
Q  151 atattctt 158  Q
    ||||||||    
T  1201 atattctt 1208  T

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