View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_high_94 (Length: 230)
Name: NF17260_high_94
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_94 |
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| [»] scaffold0056 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 21209092 - 21209286
Alignment:
| Q |
19 |
atgctattgatatcaaattaacaaaagaactattaattgaataggcttatatttctttgcagcaatggattcagaaatggtaaataagcttggaagctct |
118 |
Q |
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| T |
21209092 |
atgctattgatatcaaattaacaaaagaactattaattgaataggcttatatttctttgcagcaatggattcagaaatggtaaataagcttggaagctct |
21209191 |
T |
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| Q |
119 |
ctcttggtgccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttcagcaaaatcaagacccttctctagttgt |
213 |
Q |
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| T |
21209192 |
ctcttggtgccttctgtacaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttcagcaaaaccaagacccttctctagttgt |
21209286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 21347862 - 21347954
Alignment:
| Q |
110 |
ggaagctctctcttggtgccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttcagcaaaatcaagaccct |
202 |
Q |
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| T |
21347862 |
ggaacctctctcctggttccttctgttcaagagttagtaaaacaacccattaccaatattccagaacgatatcttcatccaaatcaagaccct |
21347954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 22985728 - 22985644
Alignment:
| Q |
116 |
tctctcttggtgccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttcagcaaaatcaagacc |
200 |
Q |
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| T |
22985728 |
tctctcctggttccttctgttcaagagttagtaaaacaacccatcaccaaagttccagaacaatatcttcaaccgaatcaagacc |
22985644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 23023304 - 23023210
Alignment:
| Q |
108 |
ttggaagctctctcttggtgccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttcagcaaaatcaagaccct |
202 |
Q |
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| T |
23023304 |
ttggaagctcaatattggtgccttctgtccaagagcttgcaaagcagcccaacacagaaattccagaacaatatcttcatccaaatcaagaccct |
23023210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 26915725 - 26915534
Alignment:
| Q |
19 |
atgctattgatatcaaattaacaaaagaactattaattgaataggcttatatttctttgcagcaatggattcagaaatggtaaataagcttggaagctct |
118 |
Q |
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||||||||||||||||||||||||| || |||| ||| |||| |||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
26915725 |
atgctattgatatcaaattaacaaacaaattatttattaaataagcttatttttctttgcagcaatggattcagaaatggtaaagaagcttggaacatct |
26915626 |
T |
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| Q |
119 |
ctcttggtgccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttcagcaaaatcaagacccttctctagt |
210 |
Q |
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| T |
26915625 |
ctcttggttccttctgtccaagagctagtaaagcaacccatcgccaaagttccagaacgatatgttcagcaaaaccaagaaccttctgtagt |
26915534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0056 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0056
Description:
Target: scaffold0056; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 73978 - 73848
Alignment:
| Q |
83 |
atggattcagaaatggtaaataagcttggaagctctctcttggtgccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatc |
182 |
Q |
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||||||||||| ||||| || || ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
73978 |
atggattcagacatggtgaagaatcttggaacctctctgacggtgccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatc |
73879 |
T |
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| Q |
183 |
ttcagcaaaatcaagacccttctctagttgt |
213 |
Q |
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| T |
73878 |
ttcagcaaaaccaagacccttctctagttgt |
73848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 108 - 202
Target Start/End: Complemental strand, 25302 - 25208
Alignment:
| Q |
108 |
ttggaagctctctcttggtgccttctgttcaggagctagtaaagcaacccatcaccaaagttccagaacgatatcttcagcaaaatcaagaccct |
202 |
Q |
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|||||| ||| || |||||||||||||| || ||||| | |||| ||||||||| |||||||||||| ||||||| | | ||||||||||||| |
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| T |
25302 |
ttggaacctcactattggtgccttctgtacaagagcttgcaaagaaacccatcatagaagttccagaacaatatctttatccaaatcaagaccct |
25208 |
T |
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