View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17260_high_96 (Length: 218)
Name: NF17260_high_96
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_high_96 |
 | |
|
| [»] scaffold0667 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 9327379 - 9327547
Alignment:
| Q |
17 |
acaccattacatgaatttgtgtaaaatatagtagattagtttatttgcttcgtgctcctaagttgtgacgaatgtaggttagcttttataaatcattctc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9327379 |
acaccattacatgaatttgtgtaaaatatagtagattagtttatttgcttcgtgctcctaagttgtgacgaatgtaggttagcttttataaatcattctt |
9327478 |
T |
|
| Q |
117 |
agacttttattacctctcttctaccttcccttagaggcaagcttcaaaaaagtatacaaaataagtata |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9327479 |
agacttttattacctctcttctaccttcccttagaggcaagcttcaaaaaagtatacaaaataagtata |
9327547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 174
Target Start/End: Original strand, 9319584 - 9319741
Alignment:
| Q |
17 |
acaccattacatgaatttgtgtaaaatatagtagattagtttatttgcttcgtgctcctaagttgtgacgaatgtaggttagcttttataaatcattctc |
116 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||||||||||||| ||| || ||||||||||||||||| | |||||||||||||| || | |||||||| |
|
|
| T |
9319584 |
acaccattacattaatttgtgtaaactatcgtagattagtttacttgttttgtgctcctaagttgtgatggatgtaggttagcttgtacagatcattcta |
9319683 |
T |
|
| Q |
117 |
agacttttattacctctcttctaccttcccttagaggcaagcttcaaaaaagtataca |
174 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||| |||||| ||||||||||||| |
|
|
| T |
9319684 |
agacttttattacctctcttcaaccttccctcagaggaaagcttaaaaaaagtataca |
9319741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0667 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 2519 - 2673
Alignment:
| Q |
17 |
acaccattacatgaatttgtgtaaaatatagtagattagtttatttgcttcgtgctcctaagttgtgacgaatgtaggttagcttttataaatcattctc |
116 |
Q |
| |
|
|||||||| || ||||||||||||| |||||| ||||||| | ||| || ||||||||||| ||||| | ||||||||||||||||||| |||||||| |
|
|
| T |
2519 |
acaccattgcaagaatttgtgtaaacaatagtaaattagttcacttgttttgtgctcctaagctgtgatgcatgtaggttagcttttatagatcattctt |
2618 |
T |
|
| Q |
117 |
agacttttattacctctcttctaccttcccttagaggcaagcttcaaaaaagtat |
171 |
Q |
| |
|
|||||| |||||||| ||||| ||||||| || |||| ||||||||||||||||| |
|
|
| T |
2619 |
agacttatattacctttcttccaccttccttttgaggtaagcttcaaaaaagtat |
2673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University