View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_12 (Length: 556)

Name: NF17260_low_12
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_12
NF17260_low_12
[»] chr4 (10 HSPs)
chr4 (1-521)||(37245011-37245533)
chr4 (7-188)||(37241994-37242181)
chr4 (4-119)||(37253096-37253211)
chr4 (4-114)||(37232847-37232957)
chr4 (119-175)||(37241923-37241979)
chr4 (60-119)||(37237812-37237871)
chr4 (118-174)||(37232772-37232828)
chr4 (116-172)||(37237697-37237753)
chr4 (118-156)||(37241889-37241927)
chr4 (214-267)||(37242195-37242248)
[»] scaffold1652 (6 HSPs)
scaffold1652 (12-175)||(338-501)
scaffold1652 (278-401)||(1-121)
scaffold1652 (106-184)||(170-248)
scaffold1652 (104-170)||(265-331)
scaffold1652 (278-315)||(402-439)
scaffold1652 (118-170)||(520-572)
[»] scaffold0902 (4 HSPs)
scaffold0902 (4-175)||(3363-3537)
scaffold0902 (119-184)||(3574-3639)
scaffold0902 (278-468)||(3688-3866)
scaffold0902 (118-174)||(3297-3353)
[»] scaffold1176 (4 HSPs)
scaffold1176 (12-171)||(123-282)
scaffold1176 (4-123)||(1288-1407)
scaffold1176 (118-168)||(303-353)
scaffold1176 (295-407)||(1211-1320)
[»] chr6 (9 HSPs)
chr6 (9-171)||(14316847-14317006)
chr6 (278-468)||(14248572-14248759)
chr6 (12-113)||(14254119-14254223)
chr6 (103-171)||(14248376-14248444)
chr6 (21-184)||(14351555-14351724)
chr6 (320-407)||(14317161-14317245)
chr6 (9-77)||(14248312-14248380)
chr6 (118-159)||(14248241-14248282)
chr6 (118-170)||(14254048-14254100)
[»] scaffold0002 (2 HSPs)
scaffold0002 (278-468)||(164967-165154)
scaffold0002 (103-171)||(165282-165350)
[»] scaffold1801 (3 HSPs)
scaffold1801 (4-111)||(70-174)
scaffold1801 (118-159)||(199-240)
scaffold1801 (132-164)||(26-58)


Alignment Details
Target: chr4 (Bit Score: 464; Significance: 0; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 521
Target Start/End: Original strand, 37245011 - 37245533
Alignment:
Q  1 aatagcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||| ||||||||||||||||||||||||||||||    
T  37245011 aatagcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggaatgctcttcgcaggcacgggagcagatgccgccgttgagttagcg 37245110  T
Q  101 gagggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaagcagcggcagctggag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37245111 gagggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaagcagcggcagctggag 37245210  T
Q  201 aatcaggagcggcagcgggaggaggagatgctggtgagttgacggcgaacggtgaaggagatggagcaccaggaagaggagcagatgccactggtgagtt 300  Q
    || ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37245211 aaccaggagcggcagcgggaggagcagatgctggtgagttgatggcgaacggtgaaggagatgaagcaccaggaagaggagcagatgccactggtgagtt 37245310  T
Q  301 agcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtggaacccagcagcagtgcaaccaaa 400  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  37245311 agcggagggagaaattattggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaactgtggaatccagcagcagtgcaaccaaa 37245410  T
Q  401 agcatcagcaaaacggtgtaggaagccatagtagaaagatgaagaaggagaatgggaatattagggtttgaagcagtgatat--tgttgtgaagaaaata 498  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  37245411 agcatcagcacaacggtgtaggaagccatagtagaaagatgaagaaggagaatgggaatattagggtttgaagcagtgatattgtgttgtgaagaaaata 37245510  T
Q  499 ttagggctgcaaaggttatttat 521  Q
    |||||||||||||||||||||||    
T  37245511 ttagggctgcaaaggttatttat 37245533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 7 - 188
Target Start/End: Original strand, 37241994 - 37242181
Alignment:
Q  7 aggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcg------ 100  Q
    ||||||||||||||||||||||||| ||| ||||||||| |||||||||| |||| | ||||||||||||| ||||||| ||| ||||||||||          
T  37241994 aggaggaggagatggtggagagttgatggcggacggtgaaggagaaggactgctcgttacaggtacgggagaagatgccaccggtgagttagcgctggtg 37242093  T
Q  101 gagggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaagcag 188  Q
    ||||||| |||||| |||||||||||||||||||||||||| ||||||||| ||||||| || |||||||||||||| ||||||||||    
T  37242094 gagggagcaatcgcaggtgatggtgcttgagatggaggagttgagatcgacaatggagtaactgcaggagcggcaacaggagaagcag 37242181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 4 - 119
Target Start/End: Original strand, 37253096 - 37253211
Alignment:
Q  4 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggag 103  Q
    |||||||||||||||||||||||||||| |||  || ||||| ||||| |||  | |||||||||||| ||||||||||||||||| ||||| |||||||    
T  37253096 agcaggaggaggagatggtggagagttgatggctgaaggtgaaggagatggagcgttcttcacaggtatgggagcagatgccgccggtgagtcagcggag 37253195  T
Q  104 ggagaaatcgctggtg 119  Q
    ||||| ||||| ||||    
T  37253196 ggagagatcgcaggtg 37253211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 37232847 - 37232957
Alignment:
Q  4 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggag 103  Q
    |||||||||||||||||||||||||||| ||| ||| || || ||||| |||    ||||||||||| |||||| |||||| |||| ||||| |||||||    
T  37232847 agcaggaggaggagatggtggagagttgatggcggatggcgaaggagatggagaattcttcacaggtgcgggaggagatgcagccggtgagtgagcggag 37232946  T
Q  104 ggagaaatcgc 114  Q
    ||||| |||||    
T  37232947 ggagagatcgc 37232957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 37241923 - 37241979
Alignment:
Q  119 gatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggca 175  Q
    |||||||||| || ||||||||||||||| ||||||||||| | |||||||||||||    
T  37241923 gatggtgctttagttggaggagtagagattgacgatggagtaatagcaggagcggca 37241979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 60 - 119
Target Start/End: Original strand, 37237812 - 37237871
Alignment:
Q  60 tcttcacaggtacgggagcagatgccgccgttgagttagcggagggagaaatcgctggtg 119  Q
    |||||||||||||||||| ||||||| ||| ||||| |||||||||||| ||||| ||||    
T  37237812 tcttcacaggtacgggaggagatgccaccggtgagtcagcggagggagagatcgcaggtg 37237871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 37232772 - 37232828
Alignment:
Q  118 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggc 174  Q
    ||||||||||| ||  |||||||| |||||||| |||||||| ||||||||||||||    
T  37232772 tgatggtgcttcagcaggaggagtggagatcgatgatggagtaacagcaggagcggc 37232828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Original strand, 37237697 - 37237753
Alignment:
Q  116 ggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcg 172  Q
    ||||| ||||||| ||| |||||||||||||| || |||||||| ||||||||||||    
T  37237697 ggtgaaggtgcttcagaaggaggagtagagatggatgatggagtaacagcaggagcg 37237753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 156
Target Start/End: Original strand, 37241889 - 37241927
Alignment:
Q  118 tgatggtgcttgagatggaggagtagagatcgacgatgg 156  Q
    ||||||||||| || ||||||||||||||||||||||||    
T  37241889 tgatggtgctttagttggaggagtagagatcgacgatgg 37241927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 267
Target Start/End: Original strand, 37242195 - 37242248
Alignment:
Q  214 agcgggaggaggagatgctggtgagttgacggcgaacggtgaaggagatggagc 267  Q
    ||| ||||||||||||| |||  |||| || |||||||||||||||||||||||    
T  37242195 agcaggaggaggagatgttggatagttaactgcgaacggtgaaggagatggagc 37242248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652 (Bit Score: 124; Significance: 2e-63; HSPs: 6)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 501 - 338
Alignment:
Q  12 gaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggagggagaaat 111  Q
    |||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  501 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgccaccgttgagttagcggagggagaaat 402  T
Q  112 cgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggca 175  Q
    ||| ||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  401 cgcaggctatggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggagcggca 338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 278 - 401
Target Start/End: Complemental strand, 121 - 1
Alignment:
Q  278 ggagcagatgccactggtgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtgg 377  Q
    |||| ||| ||||||||||||| |||||||||||||||   ||||||||||||||||||| || ||||   ||||||||||||||||| |||||| | ||    
T  121 ggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttggg---tgatgatggtggtgatctagcaacggcgg 25  T
Q  378 aacccagcagcagtgcaaccaaaa 401  Q
    ||| ||| | ||||||||||||||    
T  24 aactcagaaacagtgcaaccaaaa 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 106 - 184
Target Start/End: Complemental strand, 248 - 170
Alignment:
Q  106 agaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 184  Q
    ||||||||  || |||||| |||||||||||||||||||||||||||||||||  ||||||||||| ||| ||||||||    
T  248 agaaatcgtaggcgatggtacttgagatggaggagtagagatcgacgatggagagacagcaggagcagcagcgggagaa 170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 331 - 265
Alignment:
Q  104 ggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 170  Q
    ||||||||||  || |||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  331 ggagaaatcgtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 439 - 402
Alignment:
Q  278 ggagcagatgccactggtgagttagcggagggagaaat 315  Q
    |||||||||||||| | |||||||||||||||||||||    
T  439 ggagcagatgccaccgttgagttagcggagggagaaat 402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1652; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 572 - 520
Alignment:
Q  118 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 170  Q
    ||||||||||| |||||| || |||||||||| ||||||||| | ||||||||    
T  572 tgatggtgctttagatggtggggtagagatcgccgatggagtaatagcaggag 520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 3363 - 3537
Alignment:
Q  4 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagat---gccgccgttgagttagcg 100  Q
    |||| ||||||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||||||||||||||||   |  ||| |||||||||||    
T  3363 agcatgaggaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatatagatgccattgagttagcg 3462  T
Q  101 gagggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggca 175  Q
    |||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3463 gagggagaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagtggca 3537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Original strand, 3574 - 3639
Alignment:
Q  119 gatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 184  Q
    ||||||||||||| ||||||  ||||||||||||||||||| ||||||||||| ||| ||||||||    
T  3574 gatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagcgggagaa 3639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 278 - 468
Target Start/End: Original strand, 3688 - 3866
Alignment:
Q  278 ggagcagatgccactggtgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtgg 377  Q
    |||| ||| ||||||||||||| |||||||||||||||   ||||||||||||||||||| || |||| ||            ||||| |||||| | ||    
T  3688 ggaggagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagacttggggga------------tgatctagcaacggcgg 3775  T
Q  378 aacccagcagcagtgcaaccaaaagcatcagcaaaacgg---tgtaggaagccatagtagaaagatgaagaaggagaatgggaatattagggtt 468  Q
    ||| ||||| |||||||||||||||||||| || | |||   || | |||||||||||||||||||   |||||||||| |||| |||||||||    
T  3776 aactcagcaacagtgcaaccaaaagcatcaacacagcggttttggaagaagccatagtagaaagat---gaaggagaataggaaaattagggtt 3866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0902; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 174
Target Start/End: Original strand, 3297 - 3353
Alignment:
Q  118 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggc 174  Q
    ||||||||||| ||||||||| |||||||||| ||||||||| |  |||||||||||    
T  3297 tgatggtgctttagatggaggggtagagatcgccgatggagtaatggcaggagcggc 3353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176 (Bit Score: 96; Significance: 8e-47; HSPs: 4)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 12 - 171
Target Start/End: Complemental strand, 282 - 123
Alignment:
Q  12 gaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggagggagaaat 111  Q
    |||||||||||  ||||||| |||  || ||||| |||||||||| ||||||||||||| | |||||||| ||||| ||||||||||| |||||||||||    
T  282 gaggagatggtctagagttgatggcagatggtgaaggagaaggactgctcttcacaggttcaggagcagacgccgcggttgagttagctgagggagaaat 183  T
Q  112 cgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagc 171  Q
    ||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  182 cgcaggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagc 123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 4 - 123
Target Start/End: Complemental strand, 1407 - 1288
Alignment:
Q  4 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggag 103  Q
    |||| ||||||||||||||||| ||||| |||   ||||||| |||||||||| |||||||||||||||  ||||| ||||||||||||||||||| |||    
T  1407 agcatgaggaggagatggtggacagttgatggcacacggtgaaggagaaggactgctcttcacaggtacacgagcatatgccgccgttgagttagctgag 1308  T
Q  104 ggagaaatcgctggtgatgg 123  Q
    ||||||||||| || |||||    
T  1307 ggagaaatcgcaggagatgg 1288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 168
Target Start/End: Complemental strand, 353 - 303
Alignment:
Q  118 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcagg 168  Q
    ||||||||||| ||||||||| |||||||| ||||||||||| | ||||||    
T  353 tgatggtgctttagatggaggggtagagatggacgatggagtaatagcagg 303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1176; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 407
Target Start/End: Complemental strand, 1320 - 1211
Alignment:
Q  295 tgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtggaacccagcagcagtgca 394  Q
    ||||||||| |||||||||||   ||| ||||||||||||||| || |||| |||| |||||||| | |   |||||| ||| |||  || | |||||||    
T  1320 tgagttagctgagggagaaatcgcaggagatggaaacggagaagacttgggggatgttgatggtgatta---agcaacggtgaaacttagaaacagtgca 1224  T
Q  395 accaaaagcatca 407  Q
    |||||||||||||    
T  1223 accaaaagcatca 1211  T

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Target: chr6 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 14316847 - 14317006
Alignment:
Q  9 gaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggagggaga 108  Q
    |||||||||||| |||||||||| |||  ||||||||   |||||||| ||||||||||||||||||||||||||| |   |||||||||| || || ||    
T  14316847 gaggaggagatgatggagagttgatggcagacggtgaaatagaaggactgctcttcacaggtacgggagcagatgctg---ttgagttagctgatgggga 14316943  T
Q  109 aatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagc 171  Q
    |||||| || || ||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  14316944 aatcgcaggcgagggtgcttgagacggaggagtagagatcgatgatggagtcacatcaggagc 14317006  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 278 - 468
Target Start/End: Original strand, 14248572 - 14248759
Alignment:
Q  278 ggagcagatgccactggtgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtgg 377  Q
    |||| ||| ||||||||||||| |||||||||||||||   ||||||||||||||||||| || |||| |  ||||||||||||||||||||||| | ||    
T  14248572 ggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagac-tggggg--gatgatggtggtgatcgagcaacagcgg 14248668  T
Q  378 aacccagcagcagtgcaaccaaaagcatcagcaaaacggtgt---aggaagccatagtagaaagatgaagaaggagaatgggaatattagggtt 468  Q
    ||| ||| | ||||||||| |||||||||| || | | | ||   | |||||||||||||||||||   ||| |||||||||||||||||||||    
T  14248669 aactcagaaacagtgcaacgaaaagcatcaacacagccgagtgagaagaagccatagtagaaagat---gaacgagaatgggaatattagggtt 14248759  T

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Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 14254119 - 14254223
Alignment:
Q  12 gaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagat---gccgccgttgagttagcggagggaga 108  Q
    |||||||||||||||||||| |||  |||||||| |||||||||| |||||||||||||||||||||||||   |  ||||||||| |||||||||||||    
T  14254119 gaggagatggtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtacgggagcagatgaagatgccgttgagctagcggagggaga 14254218  T
Q  109 aatcg 113  Q
    |||||    
T  14254219 aatcg 14254223  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 14248376 - 14248444
Alignment:
Q  103 gggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagc 171  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  14248376 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagc 14248444  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 21 - 184
Target Start/End: Original strand, 14351555 - 14351724
Alignment:
Q  21 gtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcg------gagggagaaatcgc 114  Q
    ||||||||||| ||||||| | ||| ||||||||||  ||||| ||||||| ||||| ||||  | ||| ||||||||||      ||| |||||||||     
T  14351555 gtggagagttgatggtggatgatgaaggagaaggactactctttacaggtatgggagaagatatcaccggtgagttagcgccggttgagagagaaatcgt 14351654  T
Q  115 tggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagcggcaacgggagaa 184  Q
     || ||||||||||||||||| ||||||||||  || |||||||| |||||||||||| || ||||||||    
T  14351655 aggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggagcgacagcgggagaa 14351724  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 320 - 407
Target Start/End: Original strand, 14317161 - 14317245
Alignment:
Q  320 ggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtggaacccagcagcagtgcaaccaaaagcatca 407  Q
    |||||||||||||||||| || ||||   |||||||||||||||||||||||| | ||||| ||| | ||||||||||||||||||||    
T  14317161 ggtgatggaaacggagaagacttggg---tgatgatggtggtgatcgagcaacagcggaactcagaaacagtgcaaccaaaagcatca 14317245  T

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Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 14248312 - 14248380
Alignment:
Q  9 gaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggag 77  Q
    |||||||||||| |||||||||| |||  |||||||| |||||||||| |||||||||||||| |||||    
T  14248312 gaggaggagatgatggagagttgatggcagacggtgaaggagaaggactgctcttcacaggtatgggag 14248380  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 14248241 - 14248282
Alignment:
Q  118 tgatggtgcttgagatggaggagtagagatcgacgatggagt 159  Q
    ||||||||||| ||||||||| |||||||||| |||||||||    
T  14248241 tgatggtgctttagatggaggggtagagatcgccgatggagt 14248282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 14254048 - 14254100
Alignment:
Q  118 tgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 170  Q
    ||||||| ||| |||||||||  ||||||||||||||||||| | ||||||||    
T  14254048 tgatggtactttagatggagggatagagatcgacgatggagtaatagcaggag 14254100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 278 - 468
Target Start/End: Complemental strand, 165154 - 164967
Alignment:
Q  278 ggagcagatgccactggtgagttagcggagggagaaattataggtgatggaaacggagaaaacatgggcgatgatgatggtggtgatcgagcaaccgtgg 377  Q
    |||| ||| ||||||||||||| |||||||||||||||   ||||||||||||||||||| || |||| |  ||||||||||||||||||||||| | ||    
T  165154 ggagaagacgccactggtgagtcagcggagggagaaatagcaggtgatggaaacggagaagac-tggggg--gatgatggtggtgatcgagcaacagcgg 165058  T
Q  378 aacccagcagcagtgcaaccaaaagcatcagcaaaacggtgt---aggaagccatagtagaaagatgaagaaggagaatgggaatattagggtt 468  Q
    ||| ||| | ||||||||| |||||||||| || | | | ||   | |||||||||||||||||||   ||| |||||||||||||||||||||    
T  165057 aactcagaaacagtgcaacgaaaagcatcaacacagccgagtgagaagaagccatagtagaaagat---gaacgagaatgggaatattagggtt 164967  T

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Target: scaffold0002; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 165350 - 165282
Alignment:
Q  103 gggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagc 171  Q
    |||||||||||| || |||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  165350 gggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagc 165282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 111
Target Start/End: Complemental strand, 174 - 70
Alignment:
Q  4 agcaggaggaggagatggtggagagttgttggtggacggtgatggagaaggacggctcttcacaggtacgggagcagatgccgccgttgagttagcggag 103  Q
    |||| ||||||||||| ||||||||||| |||  |||||||| |||||||||| |||||||||||| || |||||||||   ||||||| |||||| |||    
T  174 agcatgaggaggagattgtggagagttgatggcagacggtgaaggagaaggactgctcttcacaggaacaggagcagat---gccgttgggttagccgag 78  T
Q  104 ggagaaat 111  Q
    ||||||||    
T  77 ggagaaat 70  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 240 - 199
Alignment:
Q  118 tgatggtgcttgagatggaggagtagagatcgacgatggagt 159  Q
    ||||| ||||| ||||||||| ||||||||||||||||||||    
T  240 tgatgatgctttagatggaggggtagagatcgacgatggagt 199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1801; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 58 - 26
Alignment:
Q  132 atggaggagtagagatcgacgatggagtcacag 164  Q
    ||||||||||||||||||||||| |||||||||    
T  58 atggaggagtagagatcgacgatcgagtcacag 26  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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