View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_14 (Length: 532)
Name: NF17260_low_14
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 58 - 406
Target Start/End: Complemental strand, 27603954 - 27603602
Alignment:
| Q |
58 |
gcaatgacatttacctttgtatcaatatcccgatcaatgagatcattaatagtacacccagcacctctcaaaagaaaagccccacatccaaacagagcca |
157 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27603954 |
gcaatgacatttacctttgtatcaatatcccgatcaatgagatcattaatagtacacccagcacctctcaaaagaaaagccccacatccaaacagagcca |
27603855 |
T |
|
| Q |
158 |
acattttaaaatcgggaagatgccctgggggtgcagccaaggtgattgacctatgacatggaatgagagaacaagcttaaaacggagcatttatactgac |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
27603854 |
acattttaaaatcgggaagatgccctgggggtgcagccaaggtgattgacctatgacatggaaagagagaacaagcttaaaacggagcatttatactgac |
27603755 |
T |
|
| Q |
258 |
agtaaataccccctcccctgttatattgcttttaacttcatatttatgctgtatacatatatgtattcat----acatgcgattatgtcaatatatgaaa |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
27603754 |
agtaaataccccctcccctgttatattgcttttaacttcatatttatgctgtatacatatatgtattcatacatacatgcgattatgtcaatatatgaaa |
27603655 |
T |
|
| Q |
354 |
aggagctccgtggcctctaaaatccatttgactagttagttaccaatctcaaa |
406 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27603654 |
aggagctccatggcctctaaaatccatttgactagttagttaccaatctcaaa |
27603602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 440 - 519
Target Start/End: Complemental strand, 27603611 - 27603532
Alignment:
| Q |
440 |
caatcacaaaccattttcttatcaataaagttgttaaattctctatgttcttgtcaaagtgaaaacatttacccataaat |
519 |
Q |
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| T |
27603611 |
caatctcaaaccattttcttatcaataaagttgttaaattctctacgttcttgtcatggtgaaaacatttacccataaat |
27603532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 27604433 - 27604397
Alignment:
| Q |
13 |
cataggaataacaatatacacaaaaaagacagcaacc |
49 |
Q |
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|||||||||||||||| |||||||||||||||||||| |
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| T |
27604433 |
cataggaataacaataaacacaaaaaagacagcaacc |
27604397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 58 - 471
Target Start/End: Original strand, 52210382 - 52210805
Alignment:
| Q |
58 |
gcaatgacatttacctttgtatcaatatcccgatcaatgagatcattaatagtacacccagcacctctcaaaagaaaagccccacatccaaacagagcca |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
52210382 |
gcaatgacatttacctttgtatcaatatcccgatcaatgagaacattaata---cacccagcacctctcaaaagaaaagccccgcatccaaacagagcca |
52210478 |
T |
|
| Q |
158 |
acattttaaaatcgggaagatgccctgggggtgcagccaaggtgattgacctatgacatggaatgagagaacaagcttaaaacggagcatttatactgac |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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|
| T |
52210479 |
acattttaaaatcgggaagatgccctgggggtgcagccaaggtgattgacctatgacatggaaagagagaacaagcttaaaatggagcatttatactgac |
52210578 |
T |
|
| Q |
258 |
agtaaataccccctcccctgt-------------tatattgcttttaacttcatatttatgctgtatacatatatgtattcatacatgcgattatgtcaa |
344 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
52210579 |
agtaaataccccctcctctgttataggaaaaaagtatattgcttttaacttcatatttatgttgtatacaaatatgtattcatacatgcgattatgtcaa |
52210678 |
T |
|
| Q |
345 |
tatatgaaaaggagctccgtggcctctaaaatccatttgactagttagttaccaatctcaaaggtgtaaacatagctactaacgacaacatatttcaatc |
444 |
Q |
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| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||||| |
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| T |
52210679 |
tgtatgaaaaggagctccatggcctctaaaatccatttgactagttagttaccaatctcaaaggtctaaacatagctactatctacaacatatttcaatc |
52210778 |
T |
|
| Q |
445 |
acaaaccattttcttatcaataaagtt |
471 |
Q |
| |
|
|| || ||||||| ||||||| ||||| |
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|
| T |
52210779 |
actaatcattttcatatcaatgaagtt |
52210805 |
T |
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