View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17260_low_16 (Length: 520)
Name: NF17260_low_16
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 17 - 357
Target Start/End: Original strand, 6704119 - 6704461
Alignment:
| Q |
17 |
aacatgcacatatatatgtatgcttagacatagtataaaagagtgtattgaattgtgtattgtttttgtgctgagatgtttcaagaattgatgaaaggaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6704119 |
aacatgcacatatatatgtatgcttagacatagtataaaagagtgtatcgaattgtgtaatgtttgtgtgctgagatgtttcaagaattgatgaaaggaa |
6704218 |
T |
|
| Q |
117 |
gaacatctcctatcatgtaatttggttagaaatcaatgacannnnnnn--agaggaagatggcaaatatgaaagaggtggtagatatttttaaaagaaaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
6704219 |
gaacatctcctatcatgtaatttggttagaaatcaatgacatttttttttagaggaagatggcgaatatgaaagaggtggtagatatttttaaaagaaaa |
6704318 |
T |
|
| Q |
215 |
tatagataatgataaaagaatatcatggtcccatgttgaatgttgcgaacttaaatatgtatttatagatagacgcatttctcacatttataaattagtt |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
6704319 |
tatagataatgataaaagaatatcatggtcccatgttgaatgttgcgaacttaaatatgtatttatagatagacgcattcctcacatttacaaattagtt |
6704418 |
T |
|
| Q |
315 |
ttaaaatggttcagttaggttcaactcaaaacaatgcattatg |
357 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
6704419 |
ttaaaatggttgagttaggttcaactcaaagtaatgcattatg |
6704461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 410 - 503
Target Start/End: Original strand, 6704515 - 6704608
Alignment:
| Q |
410 |
ccctatgagaagaaatttattatatctctttaacttataagtttttgtttttgaatagttacactacacctaacttgataatacatgaattcca |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6704515 |
ccctatgagaagaaatttattatatctctttaacttataagtttttgtttttgtatagttacactacacctaacttgataatacatgaattcca |
6704608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University