View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_18 (Length: 502)
Name: NF17260_low_18
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 20 - 417
Target Start/End: Complemental strand, 19922987 - 19922595
Alignment:
| Q |
20 |
ttcctctctcactcacacacagcatcgggactcgggagtgtaataataataataaacgatgttatcagttatcacgctggagtcgattgagttgcaaaga |
119 |
Q |
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| T |
19922987 |
ttcctctctcactcacaca--gtatcgggactcgggaatgtaataataataataaacgatgttatcagttatcacgctggagtcgattgagttgcaaaga |
19922890 |
T |
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| Q |
120 |
aagagacaagtagaaataatatgagattgaggagaatgta---gcagaacagtaatattgaatgaatcgacggtagggtaggtaaaagaaagaaattagc |
216 |
Q |
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||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||||||||| |
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| T |
19922889 |
aagagacaagtagaaataaaatgagattgaggagaatgtagcagcagaacagtaatattgaacgaattgacgttagggtaggtaaaagaaagaaattaga |
19922790 |
T |
|
| Q |
217 |
atcagagtggtttctatctggtctcaattctcatttagagctttgcatnnnnnnnnnnnnnnnnntcaatct-tcacactagatccgtaattgaaccagg |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||||||||||||| |
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| T |
19922789 |
atcagagttgtttctatctggtctcaattctcatttagagctttgcat-------tctctctctctctctctctctcactagatccgtaattgaaccagg |
19922697 |
T |
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| Q |
316 |
tacgtacgatgtttcctttcctttatcactttctatttcattcaacagattccttaaattaattaatttccctattttctcctctggatttcaagcatct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
19922696 |
tacgtacgatgtttcctttcctttatcactttctatttcattcaacagattccttaaattaattaatttccctattttctcctctggatttcaaacatct |
19922597 |
T |
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