View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_2 (Length: 855)

Name: NF17260_low_2
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_2
NF17260_low_2
[»] chr3 (28 HSPs)
chr3 (19-841)||(38626457-38627279)
chr3 (316-391)||(39657982-39658057)
chr3 (312-390)||(42644300-42644379)
chr3 (306-352)||(48089641-48089687)
chr3 (287-390)||(30958105-30958209)
chr3 (287-390)||(30973917-30974021)
chr3 (312-350)||(7012678-7012716)
chr3 (310-348)||(24916576-24916614)
chr3 (312-390)||(31766160-31766238)
chr3 (313-350)||(10852738-10852775)
chr3 (313-350)||(23918881-23918918)
chr3 (293-350)||(50664777-50664834)
chr3 (293-348)||(1441362-1441417)
chr3 (303-390)||(25181239-25181326)
chr3 (312-391)||(32112088-32112167)
chr3 (312-359)||(40415312-40415359)
chr3 (312-391)||(44225603-44225682)
chr3 (319-398)||(49158621-49158700)
chr3 (290-348)||(3776594-3776652)
chr3 (312-354)||(7899143-7899185)
chr3 (312-354)||(16246115-16246157)
chr3 (312-350)||(23496355-23496393)
chr3 (312-390)||(41115275-41115353)
chr3 (312-354)||(52931593-52931635)
chr3 (312-349)||(31084245-31084282)
chr3 (297-350)||(34561131-34561184)
chr3 (295-348)||(41591308-41591361)
chr3 (304-349)||(49526695-49526740)
[»] chr8 (20 HSPs)
chr8 (287-353)||(2764419-2764485)
chr8 (293-348)||(15206723-15206778)
chr8 (312-350)||(19649232-19649270)
chr8 (295-390)||(32994153-32994250)
chr8 (287-348)||(16972019-16972080)
chr8 (304-348)||(32767475-32767519)
chr8 (315-350)||(10552934-10552969)
chr8 (287-390)||(18123295-18123398)
chr8 (312-391)||(29970848-29970927)
chr8 (287-390)||(32927961-32928064)
chr8 (287-334)||(43492206-43492253)
chr8 (312-350)||(22936818-22936856)
chr8 (312-350)||(31246340-31246378)
chr8 (303-349)||(33588757-33588803)
chr8 (313-391)||(38715193-38715271)
chr8 (312-350)||(43550937-43550975)
chr8 (287-348)||(36447703-36447764)
chr8 (312-349)||(36779437-36779474)
chr8 (312-377)||(38516344-38516409)
chr8 (306-347)||(38875211-38875252)
[»] chr7 (18 HSPs)
chr7 (290-390)||(40491650-40491750)
chr7 (304-389)||(15311189-15311274)
chr7 (287-352)||(40561709-40561774)
chr7 (314-354)||(26975305-26975345)
chr7 (288-348)||(45557435-45557495)
chr7 (293-347)||(18350120-18350174)
chr7 (316-390)||(42481803-42481877)
chr7 (304-348)||(29829324-29829368)
chr7 (306-350)||(38230121-38230165)
chr7 (312-350)||(42752203-42752241)
chr7 (312-350)||(48459769-48459807)
chr7 (312-349)||(4228606-4228643)
chr7 (313-350)||(10371970-10372007)
chr7 (287-348)||(12306792-12306853)
chr7 (313-350)||(20088929-20088966)
chr7 (286-347)||(22310415-22310476)
chr7 (287-348)||(27571931-27571992)
chr7 (201-269)||(45369107-45369176)
[»] chr2 (17 HSPs)
chr2 (287-347)||(15220817-15220877)
chr2 (304-349)||(3853939-3853984)
chr2 (287-348)||(16518847-16518908)
chr2 (312-391)||(12110921-12111000)
chr2 (312-354)||(11005710-11005752)
chr2 (312-350)||(23359953-23359991)
chr2 (321-377)||(3716571-3716627)
chr2 (312-348)||(10918650-10918686)
chr2 (287-354)||(32307153-32307220)
chr2 (320-391)||(40704682-40704753)
chr2 (312-350)||(1945062-1945100)
chr2 (312-350)||(23377551-23377589)
chr2 (312-354)||(31224727-31224769)
chr2 (314-391)||(10618862-10618939)
chr2 (313-350)||(30007576-30007613)
chr2 (312-349)||(34433330-34433367)
chr2 (312-349)||(42089552-42089589)
[»] chr4 (21 HSPs)
chr4 (287-354)||(22683933-22684000)
chr4 (303-391)||(39000531-39000619)
chr4 (312-390)||(38740287-38740365)
chr4 (293-391)||(43868211-43868309)
chr4 (287-348)||(33843780-33843841)
chr4 (312-349)||(36150627-36150664)
chr4 (314-391)||(48575480-48575557)
chr4 (306-347)||(54487248-54487289)
chr4 (288-348)||(25927376-25927436)
chr4 (207-269)||(2171738-2171801)
chr4 (287-346)||(17898085-17898144)
chr4 (287-354)||(25319117-25319184)
chr4 (315-354)||(46382869-46382908)
chr4 (312-350)||(16566328-16566366)
chr4 (312-350)||(22699765-22699803)
chr4 (312-350)||(22980727-22980765)
chr4 (312-350)||(22994314-22994352)
chr4 (312-354)||(41866177-41866219)
chr4 (312-354)||(52062999-52063041)
chr4 (312-349)||(14597650-14597687)
chr4 (313-350)||(28947774-28947811)
[»] chr6 (14 HSPs)
chr6 (290-352)||(882758-882820)
chr6 (291-397)||(1499973-1500079)
chr6 (315-354)||(25208723-25208762)
chr6 (282-391)||(3524989-3525098)
chr6 (286-390)||(8856375-8856479)
chr6 (333-385)||(9043722-9043774)
chr6 (314-354)||(20846423-20846463)
chr6 (286-342)||(34620954-34621010)
chr6 (286-342)||(34748391-34748447)
chr6 (286-348)||(434192-434254)
chr6 (312-354)||(16442371-16442413)
chr6 (312-350)||(16548177-16548215)
chr6 (312-349)||(7486524-7486561)
chr6 (293-349)||(8551118-8551175)
[»] chr1 (25 HSPs)
chr1 (312-350)||(29759713-29759751)
chr1 (325-379)||(47307505-47307559)
chr1 (313-390)||(13344836-13344913)
chr1 (287-348)||(34915135-34915196)
chr1 (287-348)||(35961437-35961498)
chr1 (312-376)||(4347036-4347100)
chr1 (293-349)||(7301834-7301890)
chr1 (314-354)||(7335901-7335941)
chr1 (287-398)||(12655314-12655424)
chr1 (286-348)||(5268287-5268349)
chr1 (293-350)||(44786871-44786928)
chr1 (312-388)||(3887364-3887439)
chr1 (314-354)||(32365143-32365183)
chr1 (287-338)||(213246-213297)
chr1 (311-390)||(40642990-40643069)
chr1 (287-342)||(48548975-48549030)
chr1 (312-350)||(1199889-1199927)
chr1 (312-350)||(20800303-20800341)
chr1 (304-350)||(33693088-33693134)
chr1 (312-350)||(35569228-35569266)
chr1 (312-350)||(40352453-40352491)
chr1 (312-350)||(48510970-48511008)
chr1 (314-348)||(50751256-50751290)
chr1 (287-348)||(7524182-7524243)
chr1 (316-393)||(26253024-26253101)
[»] scaffold0172 (1 HSPs)
scaffold0172 (312-391)||(15241-15320)
[»] chr5 (19 HSPs)
chr5 (304-387)||(29922986-29923069)
chr5 (312-354)||(2483732-2483774)
chr5 (312-354)||(2868371-2868413)
chr5 (304-342)||(4306598-4306636)
chr5 (312-350)||(22811078-22811116)
chr5 (314-347)||(24036627-24036660)
chr5 (315-375)||(5465398-5465458)
chr5 (315-375)||(6988217-6988277)
chr5 (206-269)||(10898672-10898736)
chr5 (290-354)||(10957205-10957268)
chr5 (287-354)||(28304821-28304888)
chr5 (312-350)||(19784865-19784903)
chr5 (312-350)||(22482241-22482279)
chr5 (316-350)||(35816985-35817019)
chr5 (197-266)||(38045390-38045460)
chr5 (286-375)||(10273268-10273357)
chr5 (205-269)||(29922575-29922640)
chr5 (308-349)||(40885259-40885300)
chr5 (312-349)||(43152386-43152423)
[»] scaffold0393 (1 HSPs)
scaffold0393 (204-269)||(12378-12444)
[»] scaffold0361 (1 HSPs)
scaffold0361 (286-342)||(14075-14131)
[»] scaffold0031 (1 HSPs)
scaffold0031 (313-354)||(99701-99742)
[»] scaffold0009 (1 HSPs)
scaffold0009 (313-350)||(199394-199431)
[»] scaffold0005 (1 HSPs)
scaffold0005 (312-349)||(219691-219728)


Alignment Details
Target: chr3 (Bit Score: 774; Significance: 0; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 774; E-Value: 0
Query Start/End: Original strand, 19 - 841
Target Start/End: Original strand, 38626457 - 38627279
Alignment:
Q  19 tctctacctccagacctttgccaatactttgattgccttaataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacactagcaggtaca 118  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626457 tctctacctccagacctttgccaatactttgattgccctaataatcccatcaaatcaatctggaacaagaaacaagccatgtttaacactagcaggtaca 38626556  T
Q  119 cgaaagaaacaacataagattaaaaaattaaagacacacagaaaattatgtgtgtgtttcgtctcaattttggatggagcaaattttattttgacatgtt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38626557 cgaaagaaacaacataagattaaaaaattaaagacacacagaaaattatgtgtgcgtttcgtctcaattttggatggagcaaattttattttgacatgtt 38626656  T
Q  219 tggatgtttccagtaaaattgattttgcctcgggaattgattataacttgagacttgaatttgtatctttcaactcacttctacgtgaatgtgtccaaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  38626657 tggatgtttccagtaaaattgattttgcctcgggaattgattataacttgagacttgaatttgtatctttcaactcacttccacgtgaatatgtccaaac 38626756  T
Q  319 ataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcacattcagttagagacaaatac 418  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626757 ataaatcatttcacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcacattcagttagagacaaatac 38626856  T
Q  419 acaagcaacttctatgcaatactgctgttggaacttgcaatgacagcagacgagtcgggttaaacgaatcaaatacctgcaattgatgatcaatctccgt 518  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38626857 acaagcaacttctatgcaatactactgttggaacttgcaatgacagcagacgagtcgggttaaacgaatcaaatacctgcaattgatgatcaatctccgt 38626956  T
Q  519 ttccggatccctcatgtgatggccatgggtattaaaactaagcgaagnnnnnnncggaacaaaatacacatcaacaacctccggatccaaaacccttacc 618  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||    
T  38626957 ttccggatccctcatgtgatggccatgggtattaaaactaagcgaagaaaaaaacggaacaaaatacacatcaacaacctccggatccaaaacccttacc 38627056  T
Q  619 gcttcacttccattgccaccgccgttaagaagcgaacccatcatccagtactctacactatgctgcctcctcaaaccctgattatcaggccacagcggat 718  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627057 gcttcacttccattgccaccaccgttaagaagcgaacccatcatccagtactctacactatgctgcctcctcaaaccctgattatcaggccacagcggat 38627156  T
Q  719 aatcagcaatggtcaccggagcttccgttgtgttccggccgtcgagcattccgacgttgaaccggcgagggagatcgtacatgtagactcttaatggagc 818  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627157 aatcagcaatggtcaccggagcttccgttgtgttccggccgtcgagcattccgacgttgaaccggcgagggagatcgtacatgtagactcttaatggagc 38627256  T
Q  819 ttcatcggcgcacggagtagttg 841  Q
    |||||||||||||||||||||||    
T  38627257 ttcatcggcgcacggagtagttg 38627279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 39658057 - 39657982
Alignment:
Q  316 aacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    ||||||||| ||||||||||||||  |||||||| |||| || | ||||||||||||||| ||| |||||||||||    
T  39658057 aacataaattattttacattcaacgaacttttaagtaaaatcaattttacataatcaatttattcaaaatcaattt 39657982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Original strand, 42644300 - 42644379
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcga-ctttacataatcaattcattaaaaatcaatt 390  Q
    ||||||||||||||| ||||||||||||||||||||||||||| || |  |||| | |||||||||| | ||||||||||    
T  42644300 tccaaacataaatcactttacattcaactcacttttaactaaaatcaatttttataaaatcaattcactcaaaatcaatt 42644379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 48089687 - 48089641
Alignment:
Q  306 aatgtgtccaaacataaatcattttacattcaactcacttttaacta 352  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||    
T  48089687 aatgtatccaatcataaatcattttacattcaactcacttttaacta 48089641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 30958105 - 30958209
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcat-tttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaat 385  Q
    ||||| |||||| ||| ||||| | ||||||||||||| |  |||||||||||||||| |||| | ||| || | |||||| |||||||||||| |||||    
T  30958105 ttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30958204  T
Q  386 caatt 390  Q
    |||||    
T  30958205 caatt 30958209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 30973917 - 30974021
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcat-tttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaat 385  Q
    ||||| |||||| ||| ||||| | ||||||||||||| |  |||||||||||||||| |||| | ||| || | |||||| |||||||||||| |||||    
T  30973917 ttcaattcacttttacatgaatatatccaaacataaataaactttacattcaactcacatttagccaaaatcaattttacaaaatcaattcattcaaaat 30974016  T
Q  386 caatt 390  Q
    |||||    
T  30974017 caatt 30974021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 7012678 - 7012716
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  7012678 tccaaacataaatcactttacattcaactcacttttaac 7012716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 24916576 - 24916614
Alignment:
Q  310 tgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  24916576 tgtctaaacataaatcattttacattcaactcactttta 24916614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 31766238 - 31766160
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 390  Q
    ||||||||||||||| ||||  ||||||||||||||| | ||| |  | |||||| |||||||||||| ||||||||||    
T  31766238 tccaaacataaatcactttaacttcaactcacttttatccaaaattaattttacaaaatcaattcattcaaaatcaatt 31766160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 10852775 - 10852738
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||||| |||||||||||||||||||||||    
T  10852775 ccaaacataaatcactttacattcaactcacttttaac 10852738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 23918881 - 23918918
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||||| |||||||||||||||||||||||    
T  23918881 ccaaacataaatcactttacattcaactcacttttaac 23918918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 350
Target Start/End: Original strand, 50664777 - 50664834
Alignment:
Q  293 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||| |||  ||| ||||||||||||||| || ||||||||||||||||||||    
T  50664777 tcacttctaagtgtgtgtatccaaacataaatcaattcacattcaactcacttttaac 50664834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 293 - 348
Target Start/End: Complemental strand, 1441417 - 1441362
Alignment:
Q  293 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||||| ||||||||||| || ||||| |||||| ||||| |||||||||||||||    
T  1441417 tcacttttacgtgaatgtatctaaacacaaatcactttacgttcaactcactttta 1441362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 303 - 390
Target Start/End: Original strand, 25181239 - 25181326
Alignment:
Q  303 gtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 390  Q
    ||||| || ||||||||||||| |||||||||| |||||||||||||  ||| || | | |||| |||||||||| | || |||||||    
T  25181239 gtgaaggtatccaaacataaataattttacattaaactcacttttaatcaaaatcaattctacaaaatcaattcaatcaatatcaatt 25181326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 32112088 - 32112167
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    ||||||||||||| | ||| ||||||||||| ||||| | | | || | ||||||||||||||||| | |||||||||||    
T  32112088 tccaaacataaattacttttcattcaactcatttttatccataatcaattttacataatcaattcactcaaaatcaattt 32112167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 359
Target Start/End: Complemental strand, 40415359 - 40415312
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcga 359  Q
    ||||||||||||| | ||||||| ||||||||||||||||||| ||||    
T  40415359 tccaaacataaattaatttacatccaactcacttttaactaaaatcga 40415312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 44225603 - 44225682
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    ||||||||||||||| |||||||| |||||||||||||| ||| || | | |||| ||||||||   | |||||||||||    
T  44225603 tccaaacataaatcactttacattaaactcacttttaacgaaaatcaattctacaaaatcaattatattaaaatcaattt 44225682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 319 - 398
Target Start/End: Original strand, 49158621 - 49158700
Alignment:
Q  319 ataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttatgtcac 398  Q
    ||||||||| ||| |||| | ||||||||| || || || | |||||| |||||||||||| ||||||||||||| ||||    
T  49158621 ataaatcatcttatattctagtcacttttatcttaaatcaattttacaaaatcaattcattcaaaatcaatttatatcac 49158700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 3776594 - 3776652
Alignment:
Q  290 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    ||||||||| ||| | ||||| ||||| ||||||||| ||||||||||||||| |||||    
T  3776594 aactcacttttacatcaatgtatccaagcataaatcactttacattcaactcaatttta 3776652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 7899185 - 7899143
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    |||||||||||||| ||||||||||||||  ||||||||||||    
T  7899185 tccaaacataaatcgttttacattcaactatcttttaactaaa 7899143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 16246157 - 16246115
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||||| |||||||  ||||||||||||||||||    
T  16246157 tccaaacataaatcaatttacatctaactcacttttaactaaa 16246115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 23496355 - 23496393
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  23496355 tccaaacataaatcaattcacattcaactcacttttaac 23496393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 41115353 - 41115275
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 390  Q
    |||||||||||| |||||||||||||||||| | ||| | ||| || | | |||| |||||||||||| | ||||||||    
T  41115353 tccaaacataaaccattttacattcaactcattgttagccaaaatcaattatacaaaatcaattcattcataatcaatt 41115275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 52931635 - 52931593
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||||| |||||| | ||||||||||||||||||    
T  52931635 tccaaacataaatcaatttacactaaactcacttttaactaaa 52931593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 31084245 - 31084282
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||| || |||||||||||||||||||    
T  31084245 tccaaacataaatcaattcacattcaactcacttttaa 31084282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 297 - 350
Target Start/End: Original strand, 34561131 - 34561184
Alignment:
Q  297 ttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||| || ||||| ||||||||||||||| ||  |||||||||||||||||||    
T  34561131 ttctaagtcaatgtatccaaacataaatcaattcgcattcaactcacttttaac 34561184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 348
Target Start/End: Complemental strand, 41591361 - 41591308
Alignment:
Q  295 acttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||| ||| ||||||| ||||||||||||||| |||| |||||||||| |||||    
T  41591361 acttttacatgaatgtatccaaacataaatcactttaaattcaactcattttta 41591308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 49526740 - 49526695
Alignment:
Q  304 tgaatgtgtccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||| ||||||||||||||| |||||| |||| ||||||||||    
T  49526740 tgaatgtatccaaacataaatcaatttacaatcaattcacttttaa 49526695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 287 - 353
Target Start/End: Complemental strand, 2764485 - 2764419
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaa 353  Q
    |||||||||||| ||||||||||| |||||| |||||||| |||| |||||||| ||||||||||||    
T  2764485 ttcaactcacttttacgtgaatgtatccaaatataaatcactttatattcaacttacttttaactaa 2764419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 293 - 348
Target Start/End: Original strand, 15206723 - 15206778
Alignment:
Q  293 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    ||||||||| || ||||| ||||||||||||||| || ||||||||||||||||||    
T  15206723 tcacttctaagtcaatgtatccaaacataaatcaattcacattcaactcactttta 15206778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 19649232 - 19649270
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  19649232 tccaaacataaatcactttacattcaactcacttttaac 19649270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 32994250 - 32994153
Alignment:
Q  295 acttctacgtgaatgtgtccaaacataaatca--ttttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 390  Q
    |||| ||| |||||| ||||||||||||||||  |||||| ||||||||||||| | | | | || | |||||||||||| |||||| ||||||||||    
T  32994250 acttttacatgaatgagtccaaacataaatcaaattttaccttcaactcactttcagccagaatcaattttacataatcagttcattcaaaatcaatt 32994153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 16972080 - 16972019
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    ||||| |||||| ||| ||||||| | |||||| |||||||||||| |||||||||||||||    
T  16972080 ttcaaatcacttttacatgaatgtattcaaacacaaatcattttaccttcaactcactttta 16972019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Original strand, 32767475 - 32767519
Alignment:
Q  304 tgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    ||||||| ||||||||||||||| ||||||| |||||||||||||    
T  32767475 tgaatgtatccaaacataaatcaatttacatccaactcactttta 32767519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 350
Target Start/End: Complemental strand, 10552969 - 10552934
Alignment:
Q  315 aaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||| |||||||||||||||||||||||    
T  10552969 aaacataaatcaatttacattcaactcacttttaac 10552934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 18123295 - 18123398
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatc 386  Q
    |||||||||||| ||| | ||| | | | |||| |||||||||||| ||||| |||||||||  || |||||| ||||||| ||||||||| |  |||||    
T  18123295 ttcaactcacttttacataaatatattccaacacaaatcattttaccttcaattcacttttagttagagtcgattttacatcatcaattcactctaaatc 18123394  T
Q  387 aatt 390  Q
    ||||    
T  18123395 aatt 18123398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 29970848 - 29970927
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    ||||||||||||||| |||| | |||||||||||||||||||| || | | |||| | |||||||  | |||||||||||    
T  29970848 tccaaacataaatcactttaaactcaactcacttttaactaaaatcaattatacaaattcaattctatcaaaatcaattt 29970927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 390
Target Start/End: Original strand, 32927961 - 32928064
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatc 386  Q
    |||||||||||| ||| ||||||| |||||||| |||||| ||| | ||||||||| |||||   | | || | ||||||||||||||||  | ||||||    
T  32927961 ttcaactcacttttacatgaatgtatccaaacacaaatcactttgccttcaactcaattttagtaagaatcaattttacataatcaattccctcaaaatc 32928060  T
Q  387 aatt 390  Q
    ||||    
T  32928061 aatt 32928064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 334
Target Start/End: Complemental strand, 43492253 - 43492206
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacat 334  Q
    ||||||| |||| ||| ||||||| |||||||||||||||||||||||    
T  43492253 ttcaacttacttttacatgaatgtatccaaacataaatcattttacat 43492206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 22936856 - 22936818
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  22936856 tccaaacataaatcaattcacattcaactcacttttaac 22936818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 31246378 - 31246340
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  31246378 tccaaacataaatcaattcacattcaactcacttttaac 31246340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 33588757 - 33588803
Alignment:
Q  303 gtgaatgtgtccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||| || ||||||||||||| |||||||||| |||||||||||||    
T  33588757 gtgaaggtatccaaacataaataattttacattaaactcacttttaa 33588803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 313 - 391
Target Start/End: Complemental strand, 38715271 - 38715193
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    |||||||||||||| |||||| | |||||| ||||||||||| || | | | || |||||||||| | |||||||||||    
T  38715271 ccaaacataaatcactttacacttaactcaattttaactaaaatcaattctgcaaaatcaattcaattaaaatcaattt 38715193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 43550937 - 43550975
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  43550937 tccaaacataaatcaattcacattcaactcacttttaac 43550975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 348
Target Start/End: Complemental strand, 36447764 - 36447703
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    ||||||||| || ||| | ||||| || ||||| ||||||||||| ||||||||||||||||    
T  36447764 ttcaactcagttatacataaatgtatctaaacacaaatcattttatattcaactcactttta 36447703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 36779437 - 36779474
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  36779437 tccaaacataaattactttacattcaactcacttttaa 36779474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 377
Target Start/End: Original strand, 38516344 - 38516409
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattca 377  Q
    ||||||||||||||| ||||||||||||||||| ||| | ||| || | | |||| ||||||||||    
T  38516344 tccaaacataaatcactttacattcaactcactattatcgaaaatcaattctacaaaatcaattca 38516409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 38875252 - 38875211
Alignment:
Q  306 aatgtgtccaaacataaatcattttacattcaactcactttt 347  Q
    ||||| ||||||||||||||| |||||||| |||||||||||    
T  38875252 aatgtatccaaacataaatcactttacattgaactcactttt 38875211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 290 - 390
Target Start/End: Original strand, 40491650 - 40491750
Alignment:
Q  290 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaat 389  Q
    ||||||||| ||| ||||||| |||||| |||||||| ||||| |||||||||||||||   ||| || | |||||| |||||||||| | |||||||||    
T  40491650 aactcacttttacatgaatgtatccaaaaataaatcactttaccttcaactcacttttagtcaaaatcaattttacagaatcaattcactcaaaatcaat 40491749  T
Q  390 t 390  Q
    |    
T  40491750 t 40491750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 304 - 389
Target Start/End: Complemental strand, 15311274 - 15311189
Alignment:
Q  304 tgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaat 389  Q
    ||||||| ||||||||||||||| | ||||||||||||||||||||| | | || | |||||| ||||||||  || |||||||||    
T  15311274 tgaatgtatccaaacataaatcactatacattcaactcacttttaaccatattcaattttacacaatcaattagttcaaaatcaat 15311189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 40561774 - 40561709
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaacta 352  Q
    |||||||||||| ||| ||||||| ||||||||||||||| ||||| ||||||||| |||| ||||    
T  40561774 ttcaactcacttttacatgaatgtatccaaacataaatcactttactttcaactcaatttttacta 40561709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 26975345 - 26975305
Alignment:
Q  314 caaacataaatcattttacattcaactcacttttaactaaa 354  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  26975345 caaacataaatcattttacattcaactcacttataactaaa 26975305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 45557435 - 45557495
Alignment:
Q  288 tcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    ||||||||||| ||| ||||||| |||||||| |||||| ||||| |||||||||||||||    
T  45557435 tcaactcacttttacatgaatgtatccaaacacaaatcactttaccttcaactcactttta 45557495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 293 - 347
Target Start/End: Complemental strand, 18350174 - 18350120
Alignment:
Q  293 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttt 347  Q
    |||||| | ||||||||| |  |||||||||||||||||||||||||||||||||    
T  18350174 tcactttttcgtgaatgtatgtaaacataaatcattttacattcaactcactttt 18350120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 316 - 390
Target Start/End: Complemental strand, 42481877 - 42481803
Alignment:
Q  316 aacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 390  Q
    ||||||||||||||||||||||||||||||||    | | || | ||||||||||||||||| | ||||||||||    
T  42481877 aacataaatcattttacattcaactcactttttttcagaatcaattttacataatcaattcacttaaaatcaatt 42481803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 29829368 - 29829324
Alignment:
Q  304 tgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||    
T  29829368 tgaatgtatccaaacataaatcactttacattcaactcattttta 29829324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 38230121 - 38230165
Alignment:
Q  306 aatgtgtccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||| ||||||||||||||| || ||||||||||||||||||||    
T  38230121 aatgtatccaaacataaatcaattcacattcaactcacttttaac 38230165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 42752241 - 42752203
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  42752241 tccaaacataaatcaattcacattcaactcacttttaac 42752203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 48459769 - 48459807
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  48459769 tccaaacataaatcaattcacattcaactcacttttaac 48459807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 4228606 - 4228643
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  4228606 tccaaacataaatcacttttcattcaactcacttttaa 4228643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 10372007 - 10371970
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||||| || ||||||||||||||||||||    
T  10372007 ccaaacataaatcaattcacattcaactcacttttaac 10371970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 12306792 - 12306853
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||||||||||| ||| ||||| |  |||||||||||||| ||||  |||||||||||||||    
T  12306792 ttcaactcacttttacatgaatctagccaaacataaatcactttatcttcaactcactttta 12306853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 350
Target Start/End: Original strand, 20088929 - 20088966
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  20088929 ccaaacataaatcactttacgttcaactcacttttaac 20088966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 347
Target Start/End: Complemental strand, 22310476 - 22310415
Alignment:
Q  286 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttt 347  Q
    |||||| |||||| |||| |||||| |||||||||||||| |||||  ||||||||| ||||    
T  22310476 tttcaattcacttttacgagaatgtatccaaacataaatctttttatcttcaactcaatttt 22310415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 27571931 - 27571992
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||||||||| | ||| | ||||| ||||| ||||||||||||||| || ||||||||||||    
T  27571931 ttcaactcacatttacataaatgtatccaaccataaatcattttacctttaactcactttta 27571992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 45369107 - 45369176
Alignment:
Q  201 attttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 269  Q
    |||| ||||||| ||||||||||||| || |||| |||||||||||| ||  ||||||||| ||||||||    
T  45369107 atttgattttgagatgtttggatgttctcaagtagaattgattttgcttctagaattgattttaacttga 45369176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 287 - 347
Target Start/End: Complemental strand, 15220877 - 15220817
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttt 347  Q
    ||||||||||||  || ||||||| ||||||||||||||| ||||||||||||||||||||    
T  15220877 ttcaactcactttaacatgaatgtatccaaacataaatcactttacattcaactcactttt 15220817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 304 - 349
Target Start/End: Original strand, 3853939 - 3853984
Alignment:
Q  304 tgaatgtgtccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||    
T  3853939 tgaatgtatccaaacataaatcaatttacattcaactcacttttaa 3853984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 16518847 - 16518908
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||||||||||| ||| ||||||| |||||||| ||||||||||||  ||||||||||||||    
T  16518847 ttcaactcacttttacatgaatgtatccaaacacaaatcattttaccctcaactcactttta 16518908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 12110921 - 12111000
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    ||||||||||||||| |||| |||||||||||||||||| ||| || | || ||| |||||||||  | |||||||||||    
T  12110921 tccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattt 12111000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 11005752 - 11005710
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||||||||||||||||| ||||| |||||||||    
T  11005752 tccaaacataaatcattttacattcaagtcactattaactaaa 11005710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 23359991 - 23359953
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  23359991 tccaaacataaatcactttacattcaactcacttttaac 23359953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 321 - 377
Target Start/End: Complemental strand, 3716627 - 3716571
Alignment:
Q  321 aaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattca 377  Q
    |||||||||||| ||||||||| ||||||||||| |  |||||| ||||||||||||    
T  3716627 aaatcattttaccttcaactcatttttaactaaaataaactttagataatcaattca 3716571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 312 - 348
Target Start/End: Original strand, 10918650 - 10918686
Alignment:
Q  312 tccaaacataaatcattttacattcaactcactttta 348  Q
    ||||||||||||||| |||||||||||||||||||||    
T  10918650 tccaaacataaatcactttacattcaactcactttta 10918686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 32307153 - 32307220
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    |||||||||||| || |||||| | |||||| ||||  |||||||||||| ||||| |||||||||||    
T  32307153 ttcaactcacttttatgtgaatttatccaaatataagccattttacattcgactcaattttaactaaa 32307220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 391
Target Start/End: Original strand, 40704682 - 40704753
Alignment:
Q  320 taaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    ||||||| ||||||||||| | | ||||||| ||| || | || |||||||||||||||| |||||||||||    
T  40704682 taaatcaatttacattcaaataaattttaaccaaaatcaatttcacataatcaattcattcaaaatcaattt 40704753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 1945100 - 1945062
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  1945100 tccaaacataaatcaattcacattcaactcacttttaac 1945062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 23377551 - 23377589
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||||||  ||||||||||||||||||||||    
T  23377551 tccaaacataaatcaacttacattcaactcacttttaac 23377589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 31224727 - 31224769
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||||| || |||| |||||||||||||||||||    
T  31224727 tccaaacataaatcaattcacatccaactcacttttaactaaa 31224769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 391
Target Start/End: Complemental strand, 10618939 - 10618862
Alignment:
Q  314 caaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    ||||||||| ||| ||||| ||||| ||| ||||| ||| | || | |||||| |||||||||| |||||||||||||    
T  10618939 caaacataattcactttaccttcaattcatttttagctagaatcaattttacaaaatcaattcactaaaaatcaattt 10618862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 30007613 - 30007576
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||||| || ||||||||||||||||||||    
T  30007613 ccaaacataaatcaattcacattcaactcacttttaac 30007576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 34433367 - 34433330
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||| || |||||||||||||||||||    
T  34433367 tccaaacataaatcaattcacattcaactcacttttaa 34433330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 42089589 - 42089552
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||| || |||||||||||||||||||    
T  42089589 tccaaacataaatcaattcacattcaactcacttttaa 42089552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 22683933 - 22684000
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    |||||||| ||| ||| | |||||||||||||||||| |||||||| |||||||||||||||| ||||    
T  22683933 ttcaactcgcttttacataaatgtgtccaaacataaaccattttactttcaactcacttttaagtaaa 22684000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 303 - 391
Target Start/End: Complemental strand, 39000619 - 39000531
Alignment:
Q  303 gtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    ||||| || |||||||||||||||||||  ||| | |||||||||||||||| || | | |||| |||||||||| | |||||||||||    
T  39000619 gtgaaggtatccaaacataaatcattttttattaagctcacttttaactaaactcaattctacaaaatcaattcaatcaaaatcaattt 39000531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 390
Target Start/End: Complemental strand, 38740365 - 38740287
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 390  Q
    ||||||||||||||| || |  ||||||||||||||| | ||| || | |||||| |||||||||||| ||||||||||    
T  38740365 tccaaacataaatcacttcaacttcaactcacttttatccaaaatcaattttacaaaatcaattcattcaaaatcaatt 38740287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 293 - 391
Target Start/End: Original strand, 43868211 - 43868309
Alignment:
Q  293 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    |||||| ||| | ||||| |||||| | |||||| ||||| ||||||| ||||||||||| | |  | |||||| |||||||||||| |||||||||||    
T  43868211 tcacttttacataaatgtatccaaagacaaatcactttactttcaacttacttttaactagaattaattttacaaaatcaattcattcaaaatcaattt 43868309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 33843780 - 33843841
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||||||||||  ||| ||||| | ||||||||||||||| ||||||| |||||||||||||    
T  33843780 ttcaactcactattacatgaatatatccaaacataaatcactttacatccaactcactttta 33843841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 36150627 - 36150664
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  36150627 tccaaacataaatcactttacattcaactcacttttaa 36150664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 391
Target Start/End: Original strand, 48575480 - 48575557
Alignment:
Q  314 caaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    |||| ||||| |||||||||||||||||| ||||| | ||| || | |||||| |||||||||||| ||||| |||||    
T  48575480 caaaaataaaccattttacattcaactcatttttatcaaaaatcaattttacaaaatcaattcattcaaaattaattt 48575557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 306 - 347
Target Start/End: Complemental strand, 54487289 - 54487248
Alignment:
Q  306 aatgtgtccaaacataaatcattttacattcaactcactttt 347  Q
    ||||| ||||||||||||||| ||||||||||||||||||||    
T  54487289 aatgtatccaaacataaatcaatttacattcaactcactttt 54487248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 288 - 348
Target Start/End: Original strand, 25927376 - 25927436
Alignment:
Q  288 tcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||| |||||| ||||||||||| || ||| ||||| |||||||| |||||||||||||||    
T  25927376 tcaattcacttttacgtgaatgtatcgaaatataaaacattttactttcaactcactttta 25927436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 2171738 - 2171801
Alignment:
Q  207 ttttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 269  Q
    |||||||||||||||||||| || ||||||||||| |||||| | ||||||||||  |||||||    
T  2171738 ttttgacatgtttggatgttctcgagtaaaattgactttgcccccggaattgattcgaacttga 2171801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 346
Target Start/End: Complemental strand, 17898144 - 17898085
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttt 346  Q
    ||||| |||||| ||| | ||| | ||||||||||||||| |||||||||||||||||||    
T  17898144 ttcaattcacttttacctaaatatatccaaacataaatcactttacattcaactcacttt 17898085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 25319117 - 25319184
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    |||||||||||| ||||| ||||| || |||||||||  | ||||||||||||| |||||||| ||||    
T  25319117 ttcaactcacttttacgtaaatgtatcgaaacataaaaaactttacattcaacttacttttaagtaaa 25319184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 46382869 - 46382908
Alignment:
Q  315 aaacataaatcattttacattcaactcacttttaactaaa 354  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  46382869 aaacataaatcattttacattcaacttacttttatctaaa 46382908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 16566328 - 16566366
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  16566328 tccaaacataaatcaattcacattcaactcacttttaac 16566366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 22699765 - 22699803
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22699765 tccaaacataaatcactttacattcaacttacttttaac 22699803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 22980765 - 22980727
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22980765 tccaaacataaatcactttacattcaacttacttttaac 22980727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 22994352 - 22994314
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22994352 tccaaacataaatcactttacattcaacttacttttaac 22994314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 354
Target Start/End: Original strand, 41866177 - 41866219
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||||| || |||| |||||||||||||||||||    
T  41866177 tccaaacataaatcaattcacatccaactcacttttaactaaa 41866219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 52063041 - 52062999
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    |||||||| |||||||||||| || ||||||||||||||||||    
T  52063041 tccaaacagaaatcattttaccttaaactcacttttaactaaa 52062999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 14597687 - 14597650
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  14597687 tccaaacataaatcacttttcattcaactcacttttaa 14597650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 28947811 - 28947774
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  28947811 ccaaacataaatcactttacgttcaactcacttttaac 28947774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 290 - 352
Target Start/End: Original strand, 882758 - 882820
Alignment:
Q  290 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaacta 352  Q
    ||||||||| | | ||||||| ||||||||||||||||||||| ||||||||| |||||||||    
T  882758 aactcacttttgcatgaatgtatccaaacataaatcattttaccttcaactcaattttaacta 882820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 291 - 397
Target Start/End: Original strand, 1499973 - 1500079
Alignment:
Q  291 actcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 390  Q
    |||||||| ||| | ||||| | ||||||||||||| |||||| ||||||| |||||| | ||| || | |||||| |||||||||| | ||||||||||    
T  1499973 actcacttttacataaatgtattcaaacataaatcaatttacactcaactcgcttttagccaaaatcaattttacaaaatcaattcagtcaaaatcaatt 1500072  T
Q  391 tatgtca 397  Q
    | |||||    
T  1500073 tttgtca 1500079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 315 - 354
Target Start/End: Original strand, 25208723 - 25208762
Alignment:
Q  315 aaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  25208723 aaacataaatcattttacattcaactcacttttaattaaa 25208762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 282 - 391
Target Start/End: Original strand, 3524989 - 3525098
Alignment:
Q  282 tatctttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaa 381  Q
    |||| ||||||| |||| ||| | ||||| | |||| ||||| || ||| ||||||||||||||||| | | | || | ||||||||||||||||||| |    
T  3524989 tatcgttcaactgacttttacataaatgtattcaaatataaaccagtttgcattcaactcacttttagccacaatcaattttacataatcaattcattca 3525088  T
Q  382 aaatcaattt 391  Q
    |||| |||||    
T  3525089 aaattaattt 3525098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 390
Target Start/End: Original strand, 8856375 - 8856479
Alignment:
Q  286 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaat 385  Q
    |||||||||||||  || ||||||| |||||||| |||||||||||| ||||||  ||||||||  ||| || | || |||| |||||||  || |||||    
T  8856375 tttcaactcactttcacatgaatgtatccaaacacaaatcattttaccttcaaccaacttttaataaaattcaatttgacatgatcaattttttcaaaat 8856474  T
Q  386 caatt 390  Q
    |||||    
T  8856475 caatt 8856479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 333 - 385
Target Start/End: Complemental strand, 9043774 - 9043722
Alignment:
Q  333 attcaactcacttttaactaaagtcgactttacataatcaattcattaaaaat 385  Q
    |||||||||||||||||||||| || | | |||| ||||||||||||||||||    
T  9043774 attcaactcacttttaactaaaatcaattatacaaaatcaattcattaaaaat 9043722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 20846423 - 20846463
Alignment:
Q  314 caaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||||||||||||| ||||| |||||||||||    
T  20846423 caaacataaatcattttacattctactcatttttaactaaa 20846463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 34620954 - 34621010
Alignment:
Q  286 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 342  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| ||||| |||||||||    
T  34620954 tttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34621010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 34748391 - 34748447
Alignment:
Q  286 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 342  Q
    ||||||||||||| ||| | ||||| ||||||||||||||| ||||| |||||||||    
T  34748391 tttcaactcacttttacataaatgtatccaaacataaatcactttaccttcaactca 34748447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 286 - 348
Target Start/End: Complemental strand, 434254 - 434192
Alignment:
Q  286 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    ||||||||||||| |||  |||| | |||||||| |||||||||||| | |||||||||||||    
T  434254 tttcaactcacttttacacgaatatatccaaacacaaatcattttacctgcaactcactttta 434192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 16442413 - 16442371
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||||| || ||||||||||||||| ||||||||    
T  16442413 tccaaacataaatcaattcacattcaactcacttgtaactaaa 16442371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 16548177 - 16548215
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  16548177 tccaaacataaatcaattcacattcaactcacttttaac 16548215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 7486524 - 7486561
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||||||||| || |||||||||||||    
T  7486524 tccaaacataaatcattttaccttaaactcacttttaa 7486561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 8551175 - 8551118
Alignment:
Q  293 tcacttcta-cgtgaatgtgtccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||| ||| || |||||||||||||||||| ||| || |||||||||||||||    
T  8551175 tcacttctatcgtaaaggtgtccaaacataaatcacttttcactcaactcacttttaa 8551118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 29759713 - 29759751
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29759713 tccaaacataaatcattttacattcaactcacttttaac 29759751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 325 - 379
Target Start/End: Original strand, 47307505 - 47307559
Alignment:
Q  325 cattttacattcaactcacttttaactaaagtcgactttacataatcaattcatt 379  Q
    ||||||||||||||||||||||||||||||||| | |||| | ||||||||||||    
T  47307505 cattttacattcaactcacttttaactaaagtcaattttataaaatcaattcatt 47307559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 313 - 390
Target Start/End: Original strand, 13344836 - 13344913
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 390  Q
    |||||||||||||| ||||| ||||||||||||||||| ||| || | | |||| |||||||||| | ||||||||||    
T  13344836 ccaaacataaatcactttacgttcaactcacttttaaccaaaatcaattctacaaaatcaattcaatcaaaatcaatt 13344913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 34915135 - 34915196
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||||||||||| ||| ||||||| | ||||||||||||||||||| | |||||||||||||    
T  34915135 ttcaactcacttttacatgaatgtattcaaacataaatcattttacctgcaactcactttta 34915196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 35961437 - 35961498
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||||||||||| ||| ||||||| |  |||||||||||||||||| |||||||||||||||    
T  35961437 ttcaactcacttttacatgaatgtatagaaacataaatcattttaccttcaactcactttta 35961498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 4347036 - 4347100
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattc 376  Q
    ||||||||||||||| ||||||||||||||||||||||| ||| || | | |||| |||||||||    
T  4347036 tccaaacataaatcactttacattcaactcacttttaaccaaaatcaattctacaaaatcaattc 4347100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 7301890 - 7301834
Alignment:
Q  293 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaa 349  Q
    |||||| |||||||||||  ||||| |||||||||||||||||||| ||||||||||    
T  7301890 tcacttttacgtgaatgttaccaaatataaatcattttacattcaaatcacttttaa 7301834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 7335941 - 7335901
Alignment:
Q  314 caaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  7335941 caaacataaatcactttacattcaactcacttttaactaaa 7335901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 287 - 398
Target Start/End: Original strand, 12655314 - 12655424
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatc 386  Q
    |||||||||||| ||| ||||| | || ||||||| | |||| |||||||||||| ||||||| |||| || | || |||||||||||||||  ||||||    
T  12655314 ttcaactcactt-tacatgaatttatctaaacatagaccattctacattcaactcgcttttaagtaaaatcaatttcacataatcaattcatctaaaatc 12655412  T
Q  387 aatttatgtcac 398  Q
     |||| ||||||    
T  12655413 tatttttgtcac 12655424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 286 - 348
Target Start/End: Original strand, 5268287 - 5268349
Alignment:
Q  286 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    ||||||||||||| ||| ||||| | | |||||| |||||| |||||||||||||||||||||    
T  5268287 tttcaactcacttttacatgaatatattcaaacaaaaatcactttacattcaactcactttta 5268349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 44786928 - 44786871
Alignment:
Q  293 tcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||| ||| ||||||| | | ||||||||||||||||||||||||||| |||||||    
T  44786928 tcacttttacatgaatgtattcgaacataaatcattttacattcaactcatttttaac 44786871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 312 - 388
Target Start/End: Complemental strand, 3887439 - 3887364
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaa 388  Q
    |||||||||||| ||||||||||| ||||||| |||| ||||| || | |||||| || ||||||||| ||||||||    
T  3887439 tccaaacataaaacattttacattgaactcacctttatctaaaatc-attttacaaaaccaattcattcaaaatcaa 3887364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 32365143 - 32365183
Alignment:
Q  314 caaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||| |||||||||||||||||||| ||||||    
T  32365143 caaacataaatcaatttacattcaactcacttttgactaaa 32365183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 338
Target Start/End: Complemental strand, 213297 - 213246
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaa 338  Q
    |||||||||||| ||| || |||| ||||||||||||||| |||||||||||    
T  213297 ttcaactcacttttacatgcatgtatccaaacataaatcactttacattcaa 213246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 311 - 390
Target Start/End: Original strand, 40642990 - 40643069
Alignment:
Q  311 gtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatt 390  Q
    |||||||||||||||| |||||||||||||  || ||| | ||| || | |||||| |||||||||| | ||||||||||    
T  40642990 gtccaaacataaatcactttacattcaacttgctcttatccaaaatcaattttacagaatcaattcactcaaaatcaatt 40643069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 342
Target Start/End: Complemental strand, 48549030 - 48548975
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 342  Q
    |||||||||||| ||| | ||||| || |||||||||||||||||| |||||||||    
T  48549030 ttcaactcacttttacataaatgtatcaaaacataaatcattttaccttcaactca 48548975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 1199889 - 1199927
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  1199889 tccaaacataaatcaattcacattcaactcacttttaac 1199927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 20800341 - 20800303
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  20800341 tccaaacataaatcaattcacattcaactcacttttaac 20800303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 304 - 350
Target Start/End: Original strand, 33693088 - 33693134
Alignment:
Q  304 tgaatgtgtccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  33693088 tgaatgtatccaaacataaatcactttacgttcaactcgcttttaac 33693134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Complemental strand, 35569266 - 35569228
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  35569266 tccaaacataaatcaattcacattcaactcacttttaac 35569228  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 40352453 - 40352491
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  40352453 tccaaacataaatcactttacattaaactcacttttaac 40352491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 48510970 - 48511008
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  48510970 tccaaacataaatcaattcacattcaactcacttttaac 48511008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 50751290 - 50751256
Alignment:
Q  314 caaacataaatcattttacattcaactcactttta 348  Q
    |||||||||||||||||||||| ||||||||||||    
T  50751290 caaacataaatcattttacatttaactcactttta 50751256  T

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Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 287 - 348
Target Start/End: Original strand, 7524182 - 7524243
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcactttta 348  Q
    |||||||||||| ||| | |||||||||||||| |||||| ||||| || | ||||||||||    
T  7524182 ttcaactcacttttacataaatgtgtccaaacacaaatcactttaccttgagctcactttta 7524243  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 316 - 393
Target Start/End: Complemental strand, 26253101 - 26253024
Alignment:
Q  316 aacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaatttat 393  Q
    ||||||||| ||||||| ||||||||| ||||||    | |||| |||||| |||||||||||| |||| ||||||||    
T  26253101 aacataaatgattttactttcaactcatttttaaaccgaatcgattttacagaatcaattcattcaaaaccaatttat 26253024  T

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Target: scaffold0172 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 312 - 391
Target Start/End: Complemental strand, 15320 - 15241
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatcaattt 391  Q
    ||||||||||||||| |||| |||||||||||||||||| ||| || | || ||| |||||||||  | |||||||||||    
T  15320 tccaaacataaatcactttatattcaactcacttttaaccaaaatcaatttgacaaaatcaattctatcaaaatcaattt 15241  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 304 - 387
Target Start/End: Original strand, 29922986 - 29923069
Alignment:
Q  304 tgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaattcattaaaaatca 387  Q
    ||||||| ||||||||||||| | || ||||||||||||||| ||   ||| || | ||||||||||||||||||| |||||||    
T  29922986 tgaatgtatccaaacataaattacttcacattcaactcacttatagtcaaaatcaattttacataatcaattcattcaaaatca 29923069  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 2483774 - 2483732
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||||||||| || ||||||||||||||||||||||||    
T  2483774 tccaaacataaatcaattcacattcaactcacttttaactaaa 2483732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 2868413 - 2868371
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  2868413 tccaaacttaaatcactttacattcaactcacttttaactaaa 2868371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 304 - 342
Target Start/End: Original strand, 4306598 - 4306636
Alignment:
Q  304 tgaatgtgtccaaacataaatcattttacattcaactca 342  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  4306598 tgaatgtatccaaacataaatcattttacattcaactca 4306636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 22811078 - 22811116
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  22811078 tccaaacataaatcactttacattcaactcacttttaac 22811116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 314 - 347
Target Start/End: Original strand, 24036627 - 24036660
Alignment:
Q  314 caaacataaatcattttacattcaactcactttt 347  Q
    ||||||||||||||||||||||||||||||||||    
T  24036627 caaacataaatcattttacattcaactcactttt 24036660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 5465458 - 5465398
Alignment:
Q  315 aaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaatt 375  Q
    |||||||||||||||| ||||||| ||||||||| ||||| || | |||||| ||||||||    
T  5465458 aaacataaatcatttttcattcaattcacttttatctaaaatcaattttacaaaatcaatt 5465398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 6988217 - 6988277
Alignment:
Q  315 aaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaatt 375  Q
    ||||||||||||||||| |||||||| |||||||| |||| || | |||||| ||||||||    
T  6988217 aaacataaatcattttaaattcaacttacttttaattaaaatcaattttacaaaatcaatt 6988277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 10898672 - 10898736
Alignment:
Q  206 attttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 269  Q
    |||||||||||||||| || | || ||||||||||||||||||||  ||||||||| ||||||||    
T  10898672 attttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattctaacttga 10898736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 290 - 354
Target Start/End: Complemental strand, 10957268 - 10957205
Alignment:
Q  290 aactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    ||||||||| ||||| |||||  | ||||||||||||||| |||||||| |||||||||||||||    
T  10957268 aactcacttgtacgtaaatgtaacaaaacataaatcattt-acattcaagtcacttttaactaaa 10957205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 287 - 354
Target Start/End: Complemental strand, 28304888 - 28304821
Alignment:
Q  287 ttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    |||||| ||||  ||||||||| | |||||| |||||||||||  ||||||||||| |||||||||||    
T  28304888 ttcaacccactgttacgtgaatatatccaaatataaatcatttcccattcaactcatttttaactaaa 28304821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 19784865 - 19784903
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||| || |||||||||||||||||||||||    
T  19784865 tccaaacataaaccactttacattcaactcacttttaac 19784903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 22482241 - 22482279
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  22482241 tccaaacataaatcaattcacattcaactcacttttaac 22482279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 350
Target Start/End: Complemental strand, 35817019 - 35816985
Alignment:
Q  316 aacataaatcattttacattcaactcacttttaac 350  Q
    ||||||||| |||||||||||||||||||||||||    
T  35817019 aacataaattattttacattcaactcacttttaac 35816985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 38045390 - 38045460
Alignment:
Q  197 gcaaattttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataact 266  Q
    ||||| || ||||||||||||||| ||||| || |||| ||||||||||||||| || ||||||| |||||    
T  38045390 gcaaaattgattttgacatgtttgaatgttctcaagtagaattgattttgcctccggtattgattttaact 38045460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 375
Target Start/End: Complemental strand, 10273357 - 10273268
Alignment:
Q  286 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactcacttttaactaaagtcgactttacataatcaatt 375  Q
    ||||||| ||||| ||||  ||||| | ||| |||||||||||||| ||||||||||||| ||| |||| |  | |||||| ||||||||    
T  10273357 tttcaacccacttgtacgaaaatgtattcaagcataaatcattttatattcaactcacttataagtaaaattaattttacaaaatcaatt 10273268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 269
Target Start/End: Original strand, 29922575 - 29922640
Alignment:
Q  205 tattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 269  Q
    ||||||||||||||||  |||| || |||| |||||||||||||||  ||||||||| ||||||||    
T  29922575 tattttgacatgtttgattgttctctagtagaattgattttgcctcaagaattgattttaacttga 29922640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 308 - 349
Target Start/End: Original strand, 40885259 - 40885300
Alignment:
Q  308 tgtgtccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||||||| || |||| ||||||||||||||    
T  40885259 tgtgtccaaacataaatcaattcacatccaactcacttttaa 40885300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Complemental strand, 43152423 - 43152386
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  43152423 tccaaacataaatcacttttcattcaactcacttttaa 43152386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0393 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 204 - 269
Target Start/End: Complemental strand, 12444 - 12378
Alignment:
Q  204 ttattttgacatgtttggatgtt-tccagtaaaattgattttgcctcgggaattgattataacttga 269  Q
    ||||||||||||||||||||||| || |||| |||||||||||||||  ||| ||||| ||||||||    
T  12444 ttattttgacatgtttggatgttctcaagtagaattgattttgcctccagaaatgattctaacttga 12378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 14131 - 14075
Alignment:
Q  286 tttcaactcacttctacgtgaatgtgtccaaacataaatcattttacattcaactca 342  Q
    |||||||||||||  || ||||||| ||||||||||||||| ||||| |||||||||    
T  14131 tttcaactcactttcacatgaatgtatccaaacataaatcactttaccttcaactca 14075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 354
Target Start/End: Original strand, 99701 - 99742
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaactaaa 354  Q
    |||||||||||| | |||||||||||||||||||||| ||||    
T  99701 ccaaacataaattaatttacattcaactcacttttaattaaa 99742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 350
Target Start/End: Complemental strand, 199431 - 199394
Alignment:
Q  313 ccaaacataaatcattttacattcaactcacttttaac 350  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  199431 ccaaacataaatcactttacgttcaactcacttttaac 199394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 349
Target Start/End: Original strand, 219691 - 219728
Alignment:
Q  312 tccaaacataaatcattttacattcaactcacttttaa 349  Q
    ||||||||||||||| ||| ||||||||||||||||||    
T  219691 tccaaacataaatcacttttcattcaactcacttttaa 219728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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