View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_20 (Length: 478)
Name: NF17260_low_20
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 23266891 - 23267357
Alignment:
| Q |
1 |
ggtaacaggcagagtgtttgtgagtgtgtgagttttgtgtgaggagctatttcctaagttggaggctttgtgattggttatcaattattttgaaagagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23266891 |
ggtaacaggcagagtgtttgtgagtgtgtgagttttgtgtgaggagctatttcctaagttggaggctttgtgattggttatcaattattttgaaagagaa |
23266990 |
T |
|
| Q |
101 |
agaaagggaaaccgttgagaaaagagagtagggacagagggaaattgtgcttgtgtgtattgagtgtgacaacaaaagaggaacacttggctaaaaacga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23266991 |
agaaagggaaaccgttgagaaaagagagtagggacagagggaaagtgtgcttgtgtgtattgactgtgacaacaaaagaggaacacttggctaaaaacga |
23267090 |
T |
|
| Q |
201 |
accacgttatctaaatattcannnnnnnaaggcatgtgggcaaaatatctagctaaccattattatataaggttattgaattgactagttggaatatact |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23267091 |
accacgttatctaaatattcatttttttaaggcatgtgggcaaaatatctagctaaccattattatataaggttattgaattgactagttggaatatact |
23267190 |
T |
|
| Q |
301 |
atttttgactcttccttccatttatagttattgcatatagaattatgataaagtattcataggaatatagtacttttgtttaggaaaaagatacacagac |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| |
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| T |
23267191 |
atttttggctcttccttccatttatagttattgcatatataattatgataaagtattcataggattatagtatttttgtttaggaaaaagatacatagac |
23267290 |
T |
|
| Q |
401 |
cactcttttggtagaccctttgtaccactattgatgtggcaagggatattttaggaatttcatctcac |
468 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
23267291 |
cactcttttggtagaccctttgta-cactattgatgtggcaagggacattttagggatttcatctcac |
23267357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 23258377 - 23258500
Alignment:
| Q |
1 |
ggtaacaggcagagtgtttgtgagtgtgtgagttttgtgtgag-gagctatttcctaagttggaggctttgtgattggttatcaattattttgaaagaga |
99 |
Q |
| |
|
||||||||| ||||| ||||| |||||||| |||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||| ||| | |
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|
| T |
23258377 |
ggtaacaggtagagtatttgtaagtgtgtgtgttttgtgtgagtgagctatttcccaagttggaggctgtgtgattggttatcaattatttggaa----a |
23258472 |
T |
|
| Q |
100 |
aagaaagggaaaccgttgagaaaagaga |
127 |
Q |
| |
|
||||||||||||| | |||||||||||| |
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|
| T |
23258473 |
aagaaagggaaacagatgagaaaagaga |
23258500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 23247987 - 23248199
Alignment:
| Q |
1 |
ggtaacaggcagagtgtttgtgagtgtgtgagttttgtgtgag-gagctatttcctaagttggaggctttgtgattggttatcaattattttgaaagaga |
99 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||| |||||| || | |||||||||| |||||||||||| | || | ||| ||||| |
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|
| T |
23247987 |
ggtaacaggca-agtgtttgtgagtgtgtgtgttttgtgtgagcgagctaattgccaagttggaggttttgtgattggtcaagaaatgtttggaaag--- |
23248082 |
T |
|
| Q |
100 |
aagaaagggaaaccgttgagaaa--agagagtagggacagagggaaattgtgcttgtgtgtattgagtgtgacaacaaaagaggaacacttggctaaaaa |
197 |
Q |
| |
|
|||||||||||| | ||||||| |||||||||||||||| ||| |||||||||||||| || || |||| ||||||||||| |||||| |||| |
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|
| T |
23248083 |
-agaaagggaaacagatgagaaaagagagagtagggacaga--aaaagtgtgcttgtgtgtagcgacagttacaatgaaagaggaacatttggctcaaaa |
23248179 |
T |
|
| Q |
198 |
cgaaccacgttatctaaata |
217 |
Q |
| |
|
| | |||||||||| ||||| |
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|
| T |
23248180 |
caagccacgttatcaaaata |
23248199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 23252434 - 23252631
Alignment:
| Q |
19 |
tgtgagtgtgtgagttttgtgtgagga-gctatttcctaagttggaggctttgtgattggttatcaattattttgaaagagaaagaaagggaaaccgttg |
117 |
Q |
| |
|
|||||||||||| |||||||||||| | |||| || | ||||||||||||||||||||||||| || ||||| ||||| |||||||||||| | || |
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|
| T |
23252434 |
tgtgagtgtgtgtgttttgtgtgagcaagctagttgccaagttggaggctttgtgattggttaagaaatatttggaaag----agaaagggaaacagatg |
23252529 |
T |
|
| Q |
118 |
ag--aaaagagagtagggacagagggaaattgtgcttgtgtgtattgagtgtgacaacaaaagaggaacacttggctaaaaacgaaccacgttatctaaa |
215 |
Q |
| |
|
|| || ||||||||||||||||| || |||||||| ||||| ||| | |||| ||||||||||| |||||| ||||| | |||||||||| ||| |
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|
| T |
23252530 |
agcaaagagagagtagggacagagaaaaggtgtgcttgcgtgtagtgacaattacaatgaaagaggaacatttggctcaaaacaagccacgttatcaaaa |
23252629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 382 - 468
Target Start/End: Complemental strand, 12105460 - 12105373
Alignment:
| Q |
382 |
aggaaaaagatacacagaccactcttttggtagaccctttg-taccactattgatgtggcaagggatattttaggaatttcatctcac |
468 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12105460 |
aggaaaaagatacatagaccacccttttggtacacccttttataccactgctgatgtggcaagggatattttaggaatttcatctcac |
12105373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 392 - 465
Target Start/End: Original strand, 46644132 - 46644206
Alignment:
| Q |
392 |
tacacagaccactcttttggtagacccttt-gtaccactattgatgtggcaagggatattttaggaatttcatct |
465 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| |||||||| ||||||||||||||| |||||||||||||||||| |
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|
| T |
46644132 |
tacatagaccactcttttggtacacccttttgtaccactggtgatgtggcaagggacattttaggaatttcatct |
46644206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 32179314 - 32179262
Alignment:
| Q |
416 |
ccctttgtaccactattgatgtggcaagggatattttaggaatttcatctcac |
468 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32179314 |
ccctttgtaccactgctgatgtggcaagggatattttaggaatttcatctcac |
32179262 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 382 - 468
Target Start/End: Original strand, 18598932 - 18599018
Alignment:
| Q |
382 |
aggaaaaagatacacagaccactcttttggtagaccctttgtaccactattgatgtggcaagggatattttaggaatttcatctcac |
468 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||| ||||||||||||||| ||||||||| |||||| |||||| ||||| |||||||| |
|
|
| T |
18598932 |
aggaaatagatacatagaccactcttttggtacaccctttgtaccactgttgatgtggtaagggacattttaagaattacatctcac |
18599018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 468
Target Start/End: Complemental strand, 1326536 - 1326452
Alignment:
| Q |
385 |
aaaaagatacacagaccactcttttggtagacccttt-gtaccactattgatgtggcaagggatattttaggaatttcatctcac |
468 |
Q |
| |
|
||||| ||||| ||||||| ||||||||| || |||| |||||||| ||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
1326536 |
aaaaaaatacatagaccacccttttggtacactcttttgtaccactgctgatgtggcaagggacattttaggaatttcatctcac |
1326452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 382 - 468
Target Start/End: Complemental strand, 6408414 - 6408325
Alignment:
| Q |
382 |
aggaaaaagatacacagaccactcttttggtagac---cctttgtaccactattgatgtggcaagggatattttaggaatttcatctcac |
468 |
Q |
| |
|
||||||| |||| | |||| |||||||||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6408414 |
aggaaaatgataaatagacaactcttttggtatacacccctttgtaccactgctcatgtggcaagggatattttaggaatttcatctcac |
6408325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 5568410 - 5568358
Alignment:
| Q |
416 |
ccctttgtaccactattgatgtggcaagggatattttaggaatttcatctcac |
468 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||| ||||||||||||| |
|
|
| T |
5568410 |
ccctttgtaccactgctgatgtggcaagggacattttagaaatttcatctcac |
5568358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 9380112 - 9380062
Alignment:
| Q |
418 |
ctttgtaccactattgatgtggcaagggatattttaggaatttcatctcac |
468 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
9380112 |
ctttgtaccactgctgatgtggcaagggacattttagggatttcatctcac |
9380062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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