View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_22 (Length: 475)
Name: NF17260_low_22
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 23 - 351
Target Start/End: Original strand, 34070067 - 34070402
Alignment:
| Q |
23 |
agttgttatcttccaaacacttgaacaatcgctgcatttattttgtcgaacttcttatg---tttttgtatctttgacgtgcattttaaacttgctttgc |
119 |
Q |
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| T |
34070067 |
agttgttatcttccaaacacttgaacaattgctgcatttattttgtcgaacttcttatggtgtttttgtatctttgacgtgcattttaaacttgctttgc |
34070166 |
T |
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| Q |
120 |
atta----atggttaaattgtctttccttctgtctttcaaagtcggcaaaatatttatgattatctcatttgtcaatagaaatccttgctccaccaacac |
215 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||| |
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| T |
34070167 |
attaattaatggttaaattgtctttccttctgtctttcaaagtcggcaaaatatttatgatggtctcatttgtcaatagagatctttgctccaccaacac |
34070266 |
T |
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| Q |
216 |
caaaggtgcaagaaggtgagcctgaataagcaaaatttgtagaaaaactaccataagtagaacaagctcaagctagttcatcaagaacttcaaaagaagg |
315 |
Q |
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| T |
34070267 |
caaaggtgcaagaaggtgagcctgaataagcaaaatttgtagaaaaactaccataagtagaacaagctcaagctagttcatcaagaacttcaaaagaagg |
34070366 |
T |
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| Q |
316 |
tgtgagaatagctaagaaatcattacatgattggcc |
351 |
Q |
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| T |
34070367 |
tgtgagaatagctaagaaatcattacatgattggcc |
34070402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 375 - 462
Target Start/End: Original strand, 34070400 - 34070474
Alignment:
| Q |
375 |
gccaaacattttaggaatctcatctataatctatacgaatgggatattacacttggttcacaacacctgcacccacaaggtatccttc |
462 |
Q |
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| T |
34070400 |
gccaaacattttaggaatctcatctataatctatacgaatg-------------ggttcacaacacctgcacccacaaggtatccttc |
34070474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 117
Target Start/End: Complemental strand, 3341865 - 3341830
Alignment:
| Q |
82 |
tttttgtatctttgacgtgcattttaaacttgcttt |
117 |
Q |
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||||||||||||||||||||||| |||||||||||| |
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| T |
3341865 |
tttttgtatctttgacgtgcattgtaaacttgcttt |
3341830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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