View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_23 (Length: 466)
Name: NF17260_low_23
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 14 - 452
Target Start/End: Original strand, 53694891 - 53695323
Alignment:
| Q |
14 |
tatatgtggaggtaagaatacagtttgagggggtatgagacgagaattttccatccttttctggagaatgccatatctgacccaaaccgcacagtccatt |
113 |
Q |
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| T |
53694891 |
tatatgtggaggtaagaatacagtttgagggggtatgagacgagaattttccatccttttctggagaatgccatatctgacccaaacagcacagtccatt |
53694990 |
T |
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| Q |
114 |
aggcattagcatagctgtccttcccatctcatcactgtgtagtgtacagtgagagtgcgtcagaaagaacctcttgtatttttaacatagaagtcaaaac |
213 |
Q |
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| T |
53694991 |
aggcattagcatagctgtccttcccatctcatcactgtgtag-----agtgagagtgcgtcagaaagaacctcttgtatttttaacatagaagtcaaaac |
53695085 |
T |
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| Q |
214 |
ctcttctccataaaacttcatctccaattttggtgagtcattgtaacattcctttgcatgccacttaaatttcgtttttggagttatctttgctttaatc |
313 |
Q |
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| T |
53695086 |
ctcttctccataaaacttcatctccaattttggtgagtcattgtaacattcctttgcatgccacttaaatttcgtttttggagttatctttgctttaatc |
53695185 |
T |
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| Q |
314 |
acattcctttaattatgttgacatgttttaagggtttctatggatttaggtttctctgcttttgtttgtttcaatgttttgtattttctttggatcacaa |
413 |
Q |
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| T |
53695186 |
acattcctttaattatgtagacatgtttt-agggtttctatggatttaggtttctctgcttttgtttgtttcaatgttttgtattttctttggatcacaa |
53695284 |
T |
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| Q |
414 |
aatctaactatattattgaattcttcttttcagatattt |
452 |
Q |
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| T |
53695285 |
aatctaactatattattgaattgttcttttcagatattt |
53695323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 189 - 452
Target Start/End: Original strand, 53685746 - 53686014
Alignment:
| Q |
189 |
gtatttttaacatagaagtcaaaacctcttctccataaaacttcatctccaattttggtg---agtcattgtaacattcctttgcatgccacttaaattt |
285 |
Q |
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| T |
53685746 |
gtatttttaacatagacgtcaaaacctcttctccataaaacttcatattcaattttggtggtgagtcagtgtaatattcctttgcatgccgctcaaattt |
53685845 |
T |
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| Q |
286 |
cgtttttggagttatctttgctttaatcacattcctttaattatgttgacatgttttaagggtttct----atggatttaggtttctctgcttttgtttg |
381 |
Q |
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| T |
53685846 |
cgattttggagttatctttgttttaatcacattcctttgattatgtagacatgtttt-agggtttctatagatagatttaggtttatctgcttttggttg |
53685944 |
T |
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| Q |
382 |
tttcaatgttttgtattttctttggatcacaaaatctaactatattattgaattcttcttttcagatattt |
452 |
Q |
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| T |
53685945 |
tttcaatgttttgt-ctctctttggatcacaaaatctaactatatcattgaattgttcttttcagatattt |
53686014 |
T |
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