View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_24 (Length: 464)

Name: NF17260_low_24
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_24
NF17260_low_24
[»] chr7 (2 HSPs)
chr7 (20-420)||(35597611-35598011)
chr7 (25-109)||(30721705-30721789)
[»] chr8 (2 HSPs)
chr8 (36-119)||(16948016-16948099)
chr8 (408-445)||(22331993-22332030)
[»] chr3 (1 HSPs)
chr3 (407-447)||(49113991-49114031)
[»] chr4 (2 HSPs)
chr4 (407-445)||(2777238-2777276)
chr4 (405-445)||(23479840-23479880)
[»] chr1 (1 HSPs)
chr1 (407-445)||(28565417-28565455)
[»] chr2 (2 HSPs)
chr2 (408-445)||(44800671-44800708)
chr2 (417-445)||(15084295-15084323)


Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 20 - 420
Target Start/End: Original strand, 35597611 - 35598011
Alignment:
Q  20 tgcagctcattttacggtgaatttacaaagctactgtttgtagcttctttctcaacgctactttataccgtaatttttcctttcatcaaatacatactta 119  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||    
T  35597611 tgcagctcattttacgatgaatttacaaagctactgtttgtagcttctttctcaacgctactttataccgtgatttttcctttcatcaaacacatactta 35597710  T
Q  120 attggattgtaattttcattcggcttcttcaacatggtgagcaattttgagatacttacaagagcaactatgatagannnnnnnncaataaaggtaaggg 219  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||        | |||||||||||||    
T  35597711 attgaattgtaattttcattcggcttcttcaacaaggtgagcaattttgagatacttacaagagcaactatgatagattttttttctataaaggtaaggg 35597810  T
Q  220 ctatctcaagagccagagcagcctataagattttgtcttaaaattttgaggnnnnnnnnnnnnnnnnnnntcaatatacatatagttatacatctttacc 319  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||                   |||||||||||||||||||| |||||||||    
T  35597811 ctatctcaagagccaaagcagcctataagattttgtcttaaaattttgaggcaaaaaaacattaaaaaaatcaatatacatatagttatagatctttacc 35597910  T
Q  320 ctccttagttgatcaagttgagtatctcatatttgctttgagtgaggtttgaatctattaatcaatcaaacttgattttgttaaggcattttcttcttaa 419  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35597911 ctccttagttgatcaagttgagtatctcatatttgcttcgagtgaggtttaaatctattaatcaatcaaacttgattttgttaaggcattttcttcttaa 35598010  T
Q  420 a 420  Q
    |    
T  35598011 a 35598011  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 30721705 - 30721789
Alignment:
Q  25 ctcattttacggtgaatttacaaagctactgtttgtagcttctttctcaacgctactttataccgtaatttttcctttcatcaaa 109  Q
    ||||||| ||||| |||||| ||||||||| ||| |||||||| | ||||||||||||| |||||| ||||| |||| |||||||    
T  30721705 ctcatttcacggtaaatttataaagctactatttatagcttctctatcaacgctactttctaccgtgattttgccttacatcaaa 30721789  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 36 - 119
Target Start/End: Complemental strand, 16948099 - 16948016
Alignment:
Q  36 gtgaatttacaaagctactgtttgtagcttctttctcaacgctactttataccgtaatttttcctttcatcaaatacatactta 119  Q
    ||||||||  ||||||||| ||||||| |||| ||||||||||||||| ||| || ||||| |||||||||||| ||| |||||    
T  16948099 gtgaatttgtaaagctactatttgtaggttctatctcaacgctactttctactgtgattttgcctttcatcaaacacacactta 16948016  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 445
Target Start/End: Original strand, 22331993 - 22332030
Alignment:
Q  408 ttttcttcttaaactagttacaaactcgtgcttcgcac 445  Q
    |||||||||||||||||||||| || ||||||||||||    
T  22331993 ttttcttcttaaactagttacagacccgtgcttcgcac 22332030  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 407 - 447
Target Start/End: Complemental strand, 49114031 - 49113991
Alignment:
Q  407 attttcttcttaaactagttacaaactcgtgcttcgcacag 447  Q
    ||||| |||| ||||||||||||||||||||||||||||||    
T  49114031 attttattctgaaactagttacaaactcgtgcttcgcacag 49113991  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 445
Target Start/End: Complemental strand, 2777276 - 2777238
Alignment:
Q  407 attttcttcttaaactagttacaaactcgtgcttcgcac 445  Q
    |||||| ||||||||||||||||||| ||||||||||||    
T  2777276 attttcatcttaaactagttacaaacccgtgcttcgcac 2777238  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 405 - 445
Target Start/End: Complemental strand, 23479880 - 23479840
Alignment:
Q  405 gcattttcttcttaaactagttacaaactcgtgcttcgcac 445  Q
    ||||||||||  |||||||||||||||| ||||||||||||    
T  23479880 gcattttctttgtaaactagttacaaacccgtgcttcgcac 23479840  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 445
Target Start/End: Original strand, 28565417 - 28565455
Alignment:
Q  407 attttcttcttaaactagttacaaactcgtgcttcgcac 445  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  28565417 attttctttttaaactagttacaaacccgtgcttcgcac 28565455  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 445
Target Start/End: Complemental strand, 44800708 - 44800671
Alignment:
Q  408 ttttcttcttaaactagttacaaactcgtgcttcgcac 445  Q
    |||||||| || ||||||||||||||||||||||||||    
T  44800708 ttttcttcctatactagttacaaactcgtgcttcgcac 44800671  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 445
Target Start/End: Original strand, 15084295 - 15084323
Alignment:
Q  417 taaactagttacaaactcgtgcttcgcac 445  Q
    |||||||||||||||||||||||||||||    
T  15084295 taaactagttacaaactcgtgcttcgcac 15084323  T

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