View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17260_low_25 (Length: 460)
Name: NF17260_low_25
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 12 - 437
Target Start/End: Complemental strand, 26532386 - 26531961
Alignment:
| Q |
12 |
cataggtggggcacaagaagtgacgtggctgcacgagaatggtgagctgaagaagcttctcgaaggattgcccgtagcggattcgctagtttgccacgtg |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
26532386 |
cataggtggggcacaagaagtaacgtggctgcacgagaatggtgagctgaagaagcttcttgaaggattgcccgtagcggattcgctagtgtgccacgtg |
26532287 |
T |
|
| Q |
112 |
tgcggtgatcataggtttgtgctttgtggggagtgttccggtgcgcgtaaggtgtatgcggagaaaggtgggtttaagacttgtatggattgtaatgaga |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26532286 |
tgcggtgatcataggtttgtgctttgtggggagtgttccggtgcgcgtaaggtgtatgcggagaaaggtgggtttaagacttgtatggattgtaatgaga |
26532187 |
T |
|
| Q |
212 |
gtggtttaatcaggtgcatttcttgttcttgttgaccatgtgaacctacacgttcannnnnnnnnnnnngttatggtgtgaatgtgtaggggggattagt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
26532186 |
gtggtttaatcaggtgcatttcttgttcttgttgaccatgtgaacctacacgttcatttttgtttttttgttatggtgtgaatgtgtaggggggattagt |
26532087 |
T |
|
| Q |
312 |
aataattgaaatnnnnnnngacaaaaattgtagggaagtgaaaattattatgtcacgagagaaatgaaaatatcttaattttgttgggttgtattatgct |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26532086 |
aataattgaaataaaaaaggacaaaaattgtagggaagtgaaaattattatgtcacgagagaaatgaaaatatcttaattttgttgggttgtattatgct |
26531987 |
T |
|
| Q |
412 |
ttgtaattttgtggccatgtaggaaa |
437 |
Q |
| |
|
||||||||||||||| |||||||||| |
|
|
| T |
26531986 |
ttgtaattttgtggcaatgtaggaaa |
26531961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University