View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17260_low_3 (Length: 810)
Name: NF17260_low_3
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_3 |
 | |
|
| [»] scaffold0321 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0321 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 16 - 603
Target Start/End: Complemental strand, 16589 - 16003
Alignment:
| Q |
16 |
tactcaataaatgtatttaatacaaaaatgcttatataaatttttgtgaccgcaaccatgattaatatctataaatatataaagagatggttcgaaaaac |
115 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16589 |
tactcaataaatgtatttaatacaaaa-tgcttatataaatttttgtgaccgcaaccatgattaatatctataaatatataaagagatggttcgaaaaac |
16491 |
T |
|
| Q |
116 |
catcaagataataaatgattgttgaagagcagtacagatataggacgtggaagatcacatgataatgtctagttaaaaatacatgtgtatgaaaaatgca |
215 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16490 |
catcaagtagataaatgattgttgaagagcagtacaaatataggacgtgaaagatcacatgataatgtctagttaaaaatacatgtgtatgaaaaatgca |
16391 |
T |
|
| Q |
216 |
tatgcctatggtataatcatacttcatccacctatgtcaaatcattttcatcaatagactcttcttcagctgcttcgactccactatggcggattctgca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16390 |
tatgcctatggtataatcatacttcatccacctatgtcaaatcattttcatcaatagactcttcttcagctgcttcgactccactatggcggattctgca |
16291 |
T |
|
| Q |
316 |
gcagtaacccacaaagaacgctgcaatgacaccaatcaccaaaacagcccaacccagacctccgaatgaacttgaggccggtggagaggccggtggaggt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
16290 |
gcagtaacccacaaagaacgctgcaatgacaccaatcaccaaaacagcccaacccagacctccgaatgaacttgaggccggtggagaggcctgtggaggt |
16191 |
T |
|
| Q |
416 |
ggaggaagaggtgacttcatcggtggaggtgcaggaagaggtgacttcataggagcctgctgatgtggaggtggaggtgaaggaatgtgtgtgaagttaa |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16190 |
ggaggaagaggtgacttcatcggtggaggtgcaggaagaggtgacttcataggagcctgctgatgtggaggtggaggtgaaggaatgtgtgtgaagttaa |
16091 |
T |
|
| Q |
516 |
cgaatggattttgtggtgatggagcataatctcctaccaccagtgtagccaaacacagccacagtaaaagtaccttcaaaaaagtgaa |
603 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
16090 |
cgaatggattttgtggtgatggagcataatctccaaccaccagtgtagccaaacacagccacagtaaaagtaccttaaaaaaagtgaa |
16003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #2
Raw Score: 162; E-Value: 5e-86
Query Start/End: Original strand, 623 - 792
Target Start/End: Complemental strand, 15927 - 15758
Alignment:
| Q |
623 |
ttatatacaaacgttatctaccttgcttcttatttgtttttgacgaaaaaataataaagagaactgctatatatagaataatagaaacaatgttaagcat |
722 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15927 |
ttatatacaaactttatctaccttgcttcttatttgtttttgacgaaaaaataataaagagaactgctatatatagaataatagaaacaatgttaagcat |
15828 |
T |
|
| Q |
723 |
tgctatatcgtttaccaacaaaagaggattcacctctatcatccatccagtgattgacaaaagaggattc |
792 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15827 |
tgctatatcgtttaccgacaaaagaggattcacctctatcatccatccagtgattgacaaaagaggattc |
15758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University