View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_30 (Length: 433)
Name: NF17260_low_30
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 17 - 422
Target Start/End: Complemental strand, 50101514 - 50101113
Alignment:
| Q |
17 |
aaaaatgttactgagatgattacgaatcgtaacctaataggaacattcgaaccagaggatgaatgacgcgaatatcttacgtcaaggaaatggagaacgg |
116 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
50101514 |
aaaaatgttactaagatgattacgaatcgtaacctaataggaacattcgaaccagacgatgaataacgcgaatatcttacgtcaaggaaatggagaacgg |
50101415 |
T |
|
| Q |
117 |
aagcgagttcccaacgttgacgtagcttcaaaatctcgaaatgtgaaggagaatcctgaacatcgcttccaacagcttcttcttcttcaatggtttgcat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101414 |
aagcgagttcccaacgttgacgtagcttcaaaatctcgaaatgtgaaggagaatcctgaacatcgcttccaacagcttcttcttcttcaatggtttgcat |
50101315 |
T |
|
| Q |
217 |
tgttatcgttcctctttcgcaaccgtaactgaatagtttcacggtgaacgaaggaacgaacgagtnnnnnnnnnnnnnnnnnggattgataagaagcgct |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50101314 |
tgttatcgttcctctttcgcaaccgtaactgaatagtttcacggtgaacgaaggaacgaacgagtgagagagagagaga----gattgataagaagcgct |
50101219 |
T |
|
| Q |
317 |
ttcccgcgcaacaagtgattattattactttgaaaaagttgttgagagaaaaagaaagagttttgagaattgttttgcactgatatgttgttgtgttctg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50101218 |
ttcccgcgcaacaagtgattattattactttgaaaaagttgttgagagaaaaagagagagttttgagaattgttttgcactgatatgttgttgtgttctg |
50101119 |
T |
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| Q |
417 |
ttctgt |
422 |
Q |
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|||||| |
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| T |
50101118 |
ttctgt |
50101113 |
T |
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