View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_34 (Length: 411)

Name: NF17260_low_34
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_34
NF17260_low_34
[»] chr3 (6 HSPs)
chr3 (193-411)||(46998370-46998588)
chr3 (1-152)||(46998619-46998771)
chr3 (206-367)||(47002008-47002169)
chr3 (227-379)||(46975336-46975488)
chr3 (227-409)||(46981296-46981478)
chr3 (242-379)||(46996139-46996276)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 193 - 411
Target Start/End: Complemental strand, 46998588 - 46998370
Alignment:
Q  193 tctgtgtccttttgccatctgaaaaatgaacactccttctctaaaccttgtttctgaatgttttatcaaaccatgtcccccaatcgaagactcaaaccaa 292  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46998588 tctgtgtccttttgccatctgaaaaatgaacactccttctctaaaccttgtttctgaatgttttatcaaaccatgtcccccaatcgaagactcaaaccaa 46998489  T
Q  293 atatgctatttaggaccttgggatattagcatgttatcagcatactatattcaaaagggtcttctcttcaaaaaaccaacatcatcatcattaatcaaac 392  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  46998488 atatgctatttaggaccttgggatattagcatgttatctgcatactatattcaaaagggtcttctcttcaaaaaaccaacatcatcatcactaaacaaac 46998389  T
Q  393 aacatttcatagagaactt 411  Q
    |||||||||||||||||||    
T  46998388 aacatttcatagagaactt 46998370  T

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Target: chr3; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 46998771 - 46998619
Alignment:
Q  1 attgtattatcatagtacaaa-caatattgtatttgtcgattgtgggagcgtgcagcacggtcgttcatattgtatttatttatcatatatatacagaca 99  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  46998771 attgtattatcatagtacaaaacaatattgtatctgtcgattgtgggagcgtgcggcacggtcgttcatattgtatttatttgtcatatatatacagaca 46998672  T
Q  100 atgcattatcatttggtttaataattttttattactaataatctttataagaa 152  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46998671 atgcattatcatttggtttaataattttttattactaataatctttataagaa 46998619  T

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Target: chr3; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 206 - 367
Target Start/End: Complemental strand, 47002169 - 47002008
Alignment:
Q  206 gccatctgaaaaatgaacactccttctctaaaccttgtttctgaatgttttatcaaaccatgtcccccaatcgaagactcaaaccaaatatgctatttag 305  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47002169 gccatctgaaaaatgaatactccttctctaaaccttgtttctgaatgtttcatcaaaccatatcccccaatcgaagactcaaaccaaatatgctatttag 47002070  T
Q  306 gaccttgggatattagcatgttatcagcatactatattcaaaagggtcttctcttcaaaaaa 367  Q
    ||||||||||||||  |||| ||||  || ||||||| |||||||| |||||||||||||||    
T  47002069 gaccttgggatattgccatgatatcttcacactatatccaaaagggacttctcttcaaaaaa 47002008  T

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Target: chr3; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 227 - 379
Target Start/End: Complemental strand, 46975488 - 46975336
Alignment:
Q  227 ccttctctaaaccttgtttctgaatgttttatcaaaccatgtcccccaatcgaagactcaaaccaaatatgctatttaggaccttgggatattagcatgt 326  Q
    ||||| |||||| ||||||||| ||||||||| ||||| | |||||| ||| ||||||||||||||||||||||| ||  || ||||||||||  |||||    
T  46975488 ccttccctaaacattgtttctgcatgttttattaaaccttatccccctatcaaagactcaaaccaaatatgctatctaacacattgggatattgccatgt 46975389  T
Q  327 tatcagcatactatattcaaaagggtcttctcttcaaaaaaccaacatcatca 379  Q
    ||||  || ||||||| |||||||| ||||||||||| |||||||||||||||    
T  46975388 tatctacacactatatccaaaagggacttctcttcaagaaaccaacatcatca 46975336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 227 - 409
Target Start/End: Complemental strand, 46981478 - 46981296
Alignment:
Q  227 ccttctctaaaccttgtttctgaatgttttatcaaaccatgtcccccaatcgaagactcaaaccaaatatgctatttaggaccttgggatattagcatgt 326  Q
    ||||| |||||| | ||||||  ||||||||| ||||| | |||| ||||| |||||||||| |||||||| ||||||  || ||||||||||  |||||    
T  46981478 ccttccctaaacatcgtttcttcatgttttattaaaccttatcccacaatcaaagactcaaatcaaatatgttatttaacacattgggatattgccatgt 46981379  T
Q  327 tatcagcatactatattcaaaagggtcttctcttcaaaaaaccaacatcatcatcattaatcaaacaacatttcatagagaac 409  Q
    ||||  || | ||||  |||||||| ||| |||||||||||||||||||||||||| ||| | ||||||||||||||||||||    
T  46981378 tatctacacattataaccaaaagggacttatcttcaaaaaaccaacatcatcatcactaaaccaacaacatttcatagagaac 46981296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 242 - 379
Target Start/End: Complemental strand, 46996276 - 46996139
Alignment:
Q  242 gtttctgaatgttttatcaaaccatgtcccccaatcgaagactcaaaccaaatatgctatttaggaccttgggatattagcatgttatcagcatactata 341  Q
    ||||||||||| ||||||||||| | ||| ||||| ||||||||||| ||||| |||||||||| |||||||||||||  |||||| || ||  | ||||    
T  46996276 gtttctgaatgctttatcaaaccttatcctccaattgaagactcaaagcaaatttgctatttagcaccttgggatattgtcatgttgtctgcgaattata 46996177  T
Q  342 ttcaaaagggtcttctcttcaaaaaaccaacatcatca 379  Q
    | |||||||  |||||||||||||||||||| ||||||    
T  46996176 tccaaaaggcccttctcttcaaaaaaccaacttcatca 46996139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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