View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_35 (Length: 401)
Name: NF17260_low_35
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 43474758 - 43474419
Alignment:
| Q |
1 |
agagaacaaattcttgatggaaataattgactatatacttttagctgctcttgcccattacgtgagacctataaaaatggtggataatttactcaaacca |
100 |
Q |
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| T |
43474758 |
agagaacaaattcttgatggaaataattgactatatacttttagctgctcttgcccattacgtgagacctataaaaatggtgggtaatttactcaaacca |
43474659 |
T |
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| Q |
101 |
cgtaagaaatttgtaagtggtatcaacaaactaaattcattctattaacaaatttacttgtatgattaattttcatcaaacgttggataaattaaccaca |
200 |
Q |
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| T |
43474658 |
cgtaagaaatttgtaagtggtattaacaaactaaattcattctattaacaaatttacttgtatgattaattttcatcaatcgtcggataaattaaccaca |
43474559 |
T |
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| Q |
201 |
attcttccaagattaacctataaaaaactattttgttattttgcacaacatttggtattattatgtgtttgaggagattttgaaagatttagctgtggaa |
300 |
Q |
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| T |
43474558 |
attcttccaagattaacctataaaaaactattttgttattttgcacaacatttggtattattatgtgtttgcggagattttgaaagatttagctgtggaa |
43474459 |
T |
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| Q |
301 |
attgattaatgtgattggcgaccctgataaggtataatgt |
340 |
Q |
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| T |
43474458 |
attgattaatgtgattggcaaccctgatacggtataatgt |
43474419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 256 - 385
Target Start/End: Complemental strand, 43484515 - 43484385
Alignment:
| Q |
256 |
tattattatgtgtttga--ggagattttgaaagatttagctgtggaaattgattaatgtgattggcgaccctgataaggtataatgttaaattgaactat |
353 |
Q |
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| T |
43484515 |
tattattatgtgtttgtttggagattttgaaagatttagctatgtgaatt-agtaatgtgattggtgaccttgatacggtttaaagttaaattggattgt |
43484417 |
T |
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| Q |
354 |
acagcaacaacaacgttgtcctaatatgattc |
385 |
Q |
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| T |
43484416 |
acagcaacaacatcgttgtcctaatatgattc |
43484385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 380
Target Start/End: Complemental strand, 43474385 - 43474339
Alignment:
| Q |
334 |
ataatgttaaattgaactatacagcaacaacaacgttgtcctaatat |
380 |
Q |
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| T |
43474385 |
ataatgttaaattgaactatacaacaacaacatcgttgttctaatat |
43474339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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