View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_37 (Length: 396)
Name: NF17260_low_37
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 36109816 - 36109449
Alignment:
| Q |
18 |
accatgtccctcaccagacactatttcaggagctaagtattcgtgggtcccaacaaatgacatggacctaacatcaatgggctcagcaacaaactcaggc |
117 |
Q |
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| T |
36109816 |
accatgtccctcaccagacactatttcaggagctaagtattcgtgggtcccaacaaatgacatggacctaacatcaatgggctcagcaacaaactcaggc |
36109717 |
T |
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| Q |
118 |
ccattgaactggttttgtttcttctttcttttgcgttttggttggaaacaagacactgctgggactatacagttgggaattatgcatgaagatgaggcaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36109716 |
ccattgaactggttttgtttcttctttcttttgcgttttggttggaaacaagacactgctgggactatacagttgggaattatgcatgaagatgaggcaa |
36109617 |
T |
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| Q |
218 |
attgtgagtgttcagtatggggattttttggtagggctacttgaggagtgttttgattggagattattatctgggctggtgtggaactatcatcacattt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36109616 |
attgtgagtgttcagtatggggattttttggtagggctacttgaggagtgttttgattggagattattatctgggctggtgtggaactatcatcacattt |
36109517 |
T |
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| Q |
318 |
taatgagaggtcaaagtctgtgagcattatatggccatctgatcgaactaatacattctctggcttca |
385 |
Q |
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| T |
36109516 |
taatgagaggtcaaagtctgtgagcattatatggccatctgatcgaactaatacattctctggcttca |
36109449 |
T |
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