View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_39 (Length: 384)
Name: NF17260_low_39
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 63 - 363
Target Start/End: Original strand, 28333142 - 28333442
Alignment:
| Q |
63 |
ttcaaactcaccagacataatccaaaataacaacaacaacccacaagaactacttgcacctgctgtaaccgaagatgatctcgctcatctagcttctata |
162 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
28333142 |
ttcaaactcaccagacataatccaaaataataacaacaacctacaagaactacttgcacctgctgtaaccaaagatgatctcgcttatctagcttctata |
28333241 |
T |
|
| Q |
163 |
aatagttattctcgtcaggtggggattgattccccacctcataccaattgcttatgctcccaacgtcgtgtacttggtagttatcgatttttcacggaag |
262 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28333242 |
aatagttattctcgtcaggtggggcttgattccccacctcataccaattgcttatgctcccaacgtcgtgtacttggtagttatcgatttttcaccgaag |
28333341 |
T |
|
| Q |
263 |
aagaagaagatgatataatttttaatggctggtgatatagtctccatagtcgtcgtcttggtttggtttggtttattattatgcttaatgaatgaatgaa |
362 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28333342 |
aagaagaagatgatataatttttaatggctggtgatatagtctccatagtcgtcatcttggtttgatttggtttattattatgcttaatgaatgaatgaa |
28333441 |
T |
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| Q |
363 |
t |
363 |
Q |
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| T |
28333442 |
t |
28333442 |
T |
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