View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_4 (Length: 797)
Name: NF17260_low_4
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 1e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 197 - 473
Target Start/End: Complemental strand, 21074924 - 21074648
Alignment:
| Q |
197 |
tcatgaagaattttacattcctaagccttattatccatgcattcatcccttataactgttatttataccttggaatccgtccaatacgac----ctcaga |
292 |
Q |
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| T |
21074924 |
tcatgaagaattttacattcctaagccttattatgcatgcattcaccccttatgattgttatttatacctttgaaactgtccaatacgacttaattcaga |
21074825 |
T |
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| Q |
293 |
gactcaacgatgcagattatatgttcctcatagcagaatatttggatttcatgcgattaaagcaccttctgatcttatataactactaattagggtgcaa |
392 |
Q |
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| T |
21074824 |
gactaaacgatgcggattatatgttcgtcatagcagaacatttggatttgatgcgattaaagcaccttctgatcttatataactac----tagggtgcga |
21074729 |
T |
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| Q |
393 |
gatgtctaaactaaacagatattactggatttactccaaacttgaacttcatacttaattgtacattcaaaacttgttgaa |
473 |
Q |
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| T |
21074728 |
gatgtctaaactaaacagatattactggatttactctaaacttgaacttcatacttaattgtacattcaaaactttttgaa |
21074648 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 31 - 163
Target Start/End: Complemental strand, 21075132 - 21074999
Alignment:
| Q |
31 |
atgactacactcggttaccttgctatcgatgattcaaagcataattctattacttcgtccaagatcctagcatttatactatcacttaactacatattga |
130 |
Q |
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| T |
21075132 |
atgactacacatggttaccttgttatcaatgattcctagcataattctattacttcatcgatgatcctagcatgtatactatcactttactatatagtga |
21075033 |
T |
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| Q |
131 |
atgaattttta-aattttcaattgtagttcagac |
163 |
Q |
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| T |
21075032 |
aggaatttttataactttcgattgtagttcagac |
21074999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 559 - 643
Target Start/End: Complemental strand, 21074646 - 21074562
Alignment:
| Q |
559 |
gcttaaacatgacagtgagggtacacaagtttacatgaaataacagtaatttaataacataaaatattcaaacatcttgatccaa |
643 |
Q |
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| T |
21074646 |
gcttaaacttgacagtgaaggtacacaagtttacatgaaataagagtattgtaatagcataaaatattcaaacatcttgatccaa |
21074562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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