View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_40 (Length: 383)

Name: NF17260_low_40
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_40
NF17260_low_40
[»] chr1 (4 HSPs)
chr1 (17-262)||(15970175-15970420)
chr1 (24-254)||(33672088-33672318)
chr1 (22-104)||(30503982-30504064)
chr1 (31-80)||(35608696-35608745)
[»] chr7 (1 HSPs)
chr7 (19-104)||(38980600-38980685)
[»] chr4 (1 HSPs)
chr4 (111-248)||(37974946-37975083)
[»] chr2 (2 HSPs)
chr2 (192-248)||(32002323-32002379)
chr2 (213-249)||(39556377-39556413)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 15970420 - 15970175
Alignment:
Q  17 caatgagtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtggatttggatgtccataaaagggacaaatctgagtatgaac 116  Q
    |||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15970420 caataagtgcatcaagactaccccacgcttggcgaagaggacatggacatgatgcaggtggatttggatgtccataaaagggacaaatcagagtatgaac 15970321  T
Q  117 cttagtttttccaaattggtcgaggtaacgcaagaattcaaggacatgagctccactacaacgtgagagtgaaagtggtggtctatggtttcttaggtat 216  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15970320 cttagtttttccaaattggtcgaggtatcgcaagaattcaaggacatgagctccactacaacgtgagagtgaaagtggtggtctatggtttcttaggtat 15970221  T
Q  217 tgtccaaatgtgttccaatctcttctcttttgattctcgtatctac 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  15970220 tgtccaaatgtgttccaatctcttctcttttgattctcgtatctac 15970175  T

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Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 24 - 254
Target Start/End: Original strand, 33672088 - 33672318
Alignment:
Q  24 tgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtggatttggatgtccataaaagggacaaatctgagtatgaaccttagtt 123  Q
    |||||||||||| ||||| ||||| || |||||||| ||||| ||||||||||| |||||||| ||| |||| ||||||||||| | |||||||||||||    
T  33672088 tgcatcaagacttccccaagcttgtcgtagaggacaaggacaaggtgcaggtgggtttggatgaccaaaaaatggacaaatctgtgaatgaaccttagtt 33672187  T
Q  124 tttccaaattggtcgaggtaacgcaagaattcaaggacatgagctccactacaacgtgagagtgaaagtggtggtctatggtttcttaggtattgtccaa 223  Q
    || ||||| || || || || |  || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33672188 ttcccaaactgatcaagataccttaaaaattcaagaacatgtgctccactacaacgtgagagtgaaagtggtggtctatggtttcttaggtattgaccaa 33672287  T
Q  224 atgtgttccaatctcttctcttttgattctc 254  Q
    | |||||||| |||||||| |||||||||||    
T  33672288 aagtgttccagtctcttcttttttgattctc 33672318  T

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Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 30503982 - 30504064
Alignment:
Q  22 agtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtggatttggatgtccataaaagggacaaat 104  Q
    |||||||||||||||||||| ||||| |  |  ||||||||||||||||| || || |||||||||||||| || ||||||||    
T  30503982 agtgcatcaagactaccccaagcttgtcttaatggacatggacatggtgctggagggtttggatgtccatagaatggacaaat 30504064  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 35608745 - 35608696
Alignment:
Q  31 agactaccccatgcttggcgaagaggacatggacatggtgcaggtggatt 80  Q
    ||||||||||| ||||| ||||||||||||||||| || || ||||||||    
T  35608745 agactaccccacgcttgacgaagaggacatggacaaggagctggtggatt 35608696  T

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Target: chr7 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 38980685 - 38980600
Alignment:
Q  19 atgagtgcatcaagactaccccatgcttggcgaagaggacatggacatggtgcaggtggatttggatgtccataaaagggacaaat 104  Q
    |||||||||||||| || ||||||||||| |  |||||||||||||||||||| |||||||||||||| |||||||| ||||||||    
T  38980685 atgagtgcatcaaggcttccccatgcttgcctcagaggacatggacatggtgctggtggatttggatgcccataaaatggacaaat 38980600  T

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Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 111 - 248
Target Start/End: Complemental strand, 37975083 - 37974946
Alignment:
Q  111 atgaaccttagtttttccaaattggtcgaggtaacgcaagaattcaaggacatgagctccactacaacgtgagagtgaaagtggtggtctatggtttctt 210  Q
    ||||||||| ||||||||||| || || | |||||| |  || ||||| ||||| || |||||||||||||||||||  | |||||| | ||||||| ||    
T  37975083 atgaaccttggtttttccaaactgatccaagtaacgaagaaactcaagaacatgtgcaccactacaacgtgagagtgttaatggtggacgatggtttttt 37974984  T
Q  211 aggtattgtccaaatgtgttccaatctcttctcttttg 248  Q
    |||||||| ||||| ||||||||||| | |||||||||    
T  37974983 aggtattgaccaaaagtgttccaatcacgtctcttttg 37974946  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 32002323 - 32002379
Alignment:
Q  192 tggtggtctatggtttcttaggtattgtccaaatgtgttccaatctcttctcttttg 248  Q
    ||||||||| || || |||| |||||||||||| |||||||||||||||||||||||    
T  32002323 tggtggtctttgattccttaagtattgtccaaaagtgttccaatctcttctcttttg 32002379  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 249
Target Start/End: Complemental strand, 39556413 - 39556377
Alignment:
Q  213 gtattgtccaaatgtgttccaatctcttctcttttga 249  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  39556413 gtattgaccaaaagtgttccaatctcttctcttttga 39556377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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