View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_43 (Length: 367)

Name: NF17260_low_43
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_43
NF17260_low_43
[»] chr2 (1 HSPs)
chr2 (20-336)||(11734255-11734571)
[»] chr4 (4 HSPs)
chr4 (20-304)||(38178894-38179178)
chr4 (20-284)||(5530443-5530707)
chr4 (94-302)||(5936578-5936786)
chr4 (79-284)||(5923154-5923359)
[»] chr3 (2 HSPs)
chr3 (25-161)||(53148252-53148388)
chr3 (206-299)||(53148439-53148532)
[»] chr7 (1 HSPs)
chr7 (79-302)||(34839565-34839788)
[»] chr1 (1 HSPs)
chr1 (232-284)||(45454750-45454802)
[»] chr8 (1 HSPs)
chr8 (79-158)||(40919732-40919811)


Alignment Details
Target: chr2 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 20 - 336
Target Start/End: Original strand, 11734255 - 11734571
Alignment:
Q  20 gaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtgg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11734255 gaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtgg 11734354  T
Q  120 aacataccttccaccacttgcttcattgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgt 219  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11734355 aacataccttccaccacttgcctcattgtaataaacattgatacgttcaagttgaagttcagaatcgccgttgtattttccggtgtgatcgattccgtgt 11734454  T
Q  220 tcgtcgcaaattacttcccagaatttggcgccgatttggttcccgcattgtccgccttggatgtggaggatttctctcattttcttaggtaaattatgga 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11734455 tcgtcgcaaattacttcccagaatttggcgccgatttggttcccgcattgtccgccttggatgtggaggatttctctcattttcttgggtaaattatgga 11734554  T
Q  320 aaatttagggttttgat 336  Q
    |||||||||||||||||    
T  11734555 aaatttagggttttgat 11734571  T

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Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 38178894 - 38179178
Alignment:
Q  20 gaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtgg 119  Q
    ||||||| || || ||||| || ||||||||||| |||||||||||||| | ||  |||||||| || ||||| |||||||||||||| || ||||||||    
T  38178894 gaccgaaaacgaagttatccggtcgaaagatctggccaaacggaccggaacgaagcgaatccatggttccaggttcaagatccataagcacggcgcgtgg 38178993  T
Q  120 aacataccttccaccacttgcttcattgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgt 219  Q
    ||| || ||||||||||  |||||||||||||| ||||||||||| ||||| ||||| || || ||||| ||||||| |||||||  ||||||  |||||    
T  38178994 aacgtatcttccaccaccagcttcattgtaatagacattgatacgctcaagctgaagatcggaatcgccattgtattgtccggtggaatcgatggcgtgt 38179093  T
Q  220 tcgtcgcaaattacttcccagaatttggcgccgatttggttcccgcattgtccgccttggatgtggaggatttctctcattttct 304  Q
    |||||||| || ||||||||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  38179094 tcgtcgcagataacttcccagaatttggctccgatctggttaccgcattgcccgccttggatgtggaggatttctctcattttct 38179178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 20 - 284
Target Start/End: Complemental strand, 5530707 - 5530443
Alignment:
Q  20 gaccgaacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtgg 119  Q
    |||| |||||||||||||| || | ||||||||||||| |||| || || |  |    |||||||||||| || ||||||||||||||||| || |  ||    
T  5530707 gaccaaacacaaaattatccggtctaaagatctgaccatacggtccagaccggatactatccatagtacccggttcaagatccataagaaccgctctcgg 5530608  T
Q  120 aacataccttccaccacttgcttcattgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgtattttccggtgtgatcgattccgtgt 219  Q
    |||| | |||||||||||||||||||||||||| |||| ||| |||||||||||||| || || || ||| ||||    |||||  |||||||||| |||    
T  5530607 aacaaatcttccaccacttgcttcattgtaatacacatcgatccgttcaagttgaagatctgaatcaccggtgtagcggccggttggatcgattccatgt 5530508  T
Q  220 tcgtcgcaaattacttcccagaatttggcgccgatttggttcccgcattgtccgccttggatgtg 284  Q
    ||  | ||||  ||||||||||||||||| ||||||||||| |||||||| || |||||||||||    
T  5530507 tcagcacaaaccacttcccagaatttggctccgatttggttaccgcattggccaccttggatgtg 5530443  T

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Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 94 - 302
Target Start/End: Original strand, 5936578 - 5936786
Alignment:
Q  94 tcaagatccataagaacagcgcgtggaacataccttccaccacttgcttcattgtaataaacattgatacgttcaagttgaagttcagagtcgccgttgt 193  Q
    ||||||||||||||||| || |  |||||  |||||||||||||||||||||||||||| |||||||| ||||| | ||| || || || || |||  ||    
T  5936578 tcaagatccataagaaccgctctaggaacgaaccttccaccacttgcttcattgtaatacacattgatccgttccaattgcagatctgaatcaccgacgt 5936677  T
Q  194 attttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatttggcgccgatttggttcccgcattgtccgccttggatgtggaggatttc 293  Q
    |    |||||  |||||||||| |||||  | ||||  ||||||||||||||||| ||||||||||| || ||||| || ||||||||||| || |||||    
T  5936678 aacgaccggttggatcgattccatgttcagcacaaaccacttcccagaatttggctccgatttggtttccacattgaccaccttggatgtgaagaatttc 5936777  T
Q  294 tctcatttt 302  Q
     ||||||||    
T  5936778 cctcatttt 5936786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 284
Target Start/End: Original strand, 5923154 - 5923359
Alignment:
Q  79 tccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttcattgtaataaacattgatacgttcaagttgaagtt 178  Q
    |||||||| || || ||||||||||||||||  || || |||||| |||  |||| ||| ||||| ||||| ||||||||||| || || ||||||||||    
T  5923154 tccatagtccccggttcaagatccataagaatcgcacgaggaacaaaccggccacaactagcttcgttgtagtaaacattgattcgctctagttgaagtt 5923253  T
Q  179 cagagtcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatttggcgccgatttggttcccgcattgtccgccttg 278  Q
    | |||   ||  ||||   ||||||  | ||||||||||| ||| ||||||  |||||||||||||| || ||||||||||| |||||||| || |||||    
T  5923254 ctgaggtaccactgtaacgtccggtagggtcgattccgtgctcggcgcaaaccacttcccagaattttgctccgatttggttaccgcattggccaccttg 5923353  T
Q  279 gatgtg 284  Q
     |||||    
T  5923354 aatgtg 5923359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 161
Target Start/End: Original strand, 53148252 - 53148388
Alignment:
Q  25 aacacaaaattatcaggacgaaagatctgaccaaacggaccggatctaacggaatccatagtaccaggctcaagatccataagaacagcgcgtggaacat 124  Q
    ||||| |||||||||||||||||||||| ||| |||||||| ||||| |     |||||||||||||| ||||||||||||||||| || |  |||||||    
T  53148252 aacacgaaattatcaggacgaaagatcttaccgaacggaccagatctgatactttccatagtaccaggttcaagatccataagaactgctctaggaacat 53148351  T
Q  125 accttccaccacttgcttcattgtaataaacattgat 161  Q
    |||||||||||   |||||||||||||| ||||||||    
T  53148352 accttccaccagaagcttcattgtaatacacattgat 53148388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 299
Target Start/End: Original strand, 53148439 - 53148532
Alignment:
Q  206 gatcgattccgtgttcgtcgcaaattacttcccagaatttggcgccgatttggttcccgcattgtccgccttggatgtggaggatttctctcat 299  Q
    |||| || |||||||||||||| || || |||||||||||||  || |||||||| |||||||| || ||||| | ||| | ||| ||||||||    
T  53148439 gatcaatgccgtgttcgtcgcatatcacctcccagaatttggatccaatttggttaccgcattggccaccttgaacgtgcaagatctctctcat 53148532  T

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Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 79 - 302
Target Start/End: Complemental strand, 34839788 - 34839565
Alignment:
Q  79 tccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttcattgtaataaacattgatacgttcaagttgaagtt 178  Q
    ||||| ||||||||||| |  ||||| || || |||||||||||| ||||||| |     ||||| ||||| ||||||||||  || |||||||| || |    
T  34839788 tccatggtaccaggctccaagtccatgaggacggcgcgtggaacaaaccttccgcatgaagcttcgttgtagtaaacattgacgcgctcaagttgtagat 34839689  T
Q  179 cagagtcgccgttgtattttccggtgtgatcgattccgtgttcgtcgcaaattacttcccagaatttggcgccgatttggttcccgcattgtccgccttg 278  Q
    | ||||  |||  |||| |||||||  |||| || ||||| |||||||||| ||||||||||||||| |  ||||| ||||||||||||||||| |||||    
T  34839688 ctgagtttccgacgtatcttccggttggatctatgccgtgctcgtcgcaaactacttcccagaattttgaaccgatctggttcccgcattgtcctccttg 34839589  T
Q  279 gatgtggaggatttctctcatttt 302  Q
     |  || || ||||||||||||||    
T  34839588 aacatgaagaatttctctcatttt 34839565  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 284
Target Start/End: Original strand, 45454750 - 45454802
Alignment:
Q  232 acttcccagaatttggcgccgatttggttcccgcattgtccgccttggatgtg 284  Q
    ||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  45454750 acttcccagaatttggctccgatttggttcccgcattgtcctccttggatgtg 45454802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 40919732 - 40919811
Alignment:
Q  79 tccatagtaccaggctcaagatccataagaacagcgcgtggaacataccttccaccacttgcttcattgtaataaacatt 158  Q
    ||||| ||||| || ||||| ||||| |||||||| |  |||||||| ||||||||||||||||||||||| || |||||    
T  40919732 tccatggtacctggttcaaggtccattagaacagctctaggaacatatcttccaccacttgcttcattgtagtacacatt 40919811  T

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