View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17260_low_46 (Length: 356)
Name: NF17260_low_46
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_46 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 4 - 349
Target Start/End: Original strand, 47027842 - 47028186
Alignment:
| Q |
4 |
tcagagagttcagagagtctgtattgccttcaaaaactactgtgaggagaaaaacatagaagggtaagcttcaaaatatcatgtctaattttctgtatgt |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
47027842 |
tcagagagttcagagagtctgtattgccttcaaaaactactgtgaggagaaaaacatagaagggtaagcttcaaaatatcatgtctaattttctttatgt |
47027941 |
T |
|
| Q |
104 |
tttgaaaactctttggcaatacaatgttcatattctgataggaaaaggtatacatgnnnnnnnnnnnnnngcatttcaggtgctttaaaagcctgcaaga |
203 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47027942 |
tttgaaaactctttggcaatacaatgttcatattctgataggaaaaaatatacatgttttttttttgtt-gcatttcaggtgctttaaaagcctgcaaga |
47028040 |
T |
|
| Q |
204 |
cataaagcaggagtataccttagtgaaaaccaagtttgagacactctttaaggtaaggagatgaagatcctttcatatatgtattaaattaaataactat |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47028041 |
cataaagcaggagtataccttagtgaaaaccaagtttgagacactctttaaggtaaggagatgaagatcctttcatatatgtattaaattaaataactat |
47028140 |
T |
|
| Q |
304 |
aaactatttttgtcttctttaaagttggtaagtttctacttctgtg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47028141 |
aaactatttttgtcttctttaaagttggtaagtttctacttctgtg |
47028186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University