View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17260_low_50 (Length: 331)
Name: NF17260_low_50
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17260_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 9421576 - 9421888
Alignment:
| Q |
1 |
tattgggtccaaacccgaatcaaggaatcgtgtactagaatcagcaacataaaccgggcaggttaatgaactacaatccatgaaagtgtagctaaaattg |
100 |
Q |
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| T |
9421576 |
tattgggtccaaacccgaatcaaggaatcgtgtaccagaatcagcaaaataaaccgggcaggttaatgaactacaatccatgaaagtgtagctattattg |
9421675 |
T |
|
| Q |
101 |
tagtcggatcttgcaaataattgaaaaggtgaaatttgtgaatgaagaagctttaaaaactgttttggaaggcaattttcaggatcagatatccatagtt |
200 |
Q |
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| T |
9421676 |
gagtcggatcttgcaaataattgaaaaggtgaaatttgtgaatgaagaagctttaacaactgttttggaaggcaattttcaggatcagatatccatagtt |
9421775 |
T |
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| Q |
201 |
cctggttgtcataaaatatcctcttcacttctaattgaattggaccagaatgtgtaggaagctctattagagtttttcttgtgtctgaacaagtaagctc |
300 |
Q |
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| T |
9421776 |
cctggtcgtcataaaatatcctcttcacttctaattgaattggaccagaatgtgtaggaagctctattagagtttttcttgtgtctgaacaagtaagctc |
9421875 |
T |
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| Q |
301 |
aaatccggggtaa |
313 |
Q |
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| T |
9421876 |
aaatccggggtaa |
9421888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 9440149 - 9440339
Alignment:
| Q |
1 |
tattgggtccaaacccgaatcaaggaatcgtgtactagaatcagcaacataaaccgggcaggttaatgaactacaatccatgaaagtgtagctaaaattg |
100 |
Q |
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|||||||||||||||| || |||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
9440149 |
tattgggtccaaacccaaagcaaggagtgtattactagaatcagcaacataaaccgggcaggataatgaactacaatccatgaaagtgtagctataattg |
9440248 |
T |
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| Q |
101 |
tagtcggatcttgcaaataattgaaaaggtgaaatttgtgaatgaagaagctttaaaaactgttttggaaggcaattttcaggatcagata |
191 |
Q |
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| T |
9440249 |
tagtcggatctcgaaaataattgaaaaggtgaaatttgtgaatgaagaagctttaaaaactgtcttggaaggcaattttcagggtcagata |
9440339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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