View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17260_low_52 (Length: 315)

Name: NF17260_low_52
Description: NF17260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17260_low_52
NF17260_low_52
[»] chr1 (2 HSPs)
chr1 (21-206)||(44541235-44541421)
chr1 (206-311)||(51740291-51740396)
[»] chr2 (11 HSPs)
chr2 (21-206)||(295816-296000)
chr2 (21-206)||(302452-302636)
chr2 (21-85)||(45485783-45485847)
chr2 (21-85)||(39190645-39190709)
chr2 (21-83)||(18164005-18164067)
chr2 (21-83)||(21794487-21794549)
chr2 (21-83)||(43081634-43081696)
chr2 (33-84)||(29960425-29960476)
chr2 (44-83)||(13273380-13273419)
chr2 (57-85)||(45497050-45497078)
chr2 (57-85)||(45504792-45504820)
[»] chr8 (5 HSPs)
chr8 (21-204)||(37786460-37786643)
chr8 (21-206)||(37186664-37186850)
chr8 (55-206)||(37790983-37791134)
chr8 (21-83)||(11096199-11096261)
chr8 (21-55)||(37791180-37791214)
[»] chr5 (6 HSPs)
chr5 (33-206)||(690121-690282)
chr5 (21-84)||(32090278-32090341)
chr5 (21-83)||(9503723-9503785)
chr5 (21-85)||(3627562-3627626)
chr5 (21-83)||(9507705-9507767)
chr5 (22-85)||(34854126-34854194)
[»] chr3 (7 HSPs)
chr3 (113-204)||(41925118-41925209)
chr3 (21-103)||(28920250-28920332)
chr3 (21-83)||(531527-531589)
chr3 (21-72)||(4315634-4315685)
chr3 (21-84)||(47743890-47743953)
chr3 (21-57)||(32813660-32813696)
chr3 (39-83)||(55418479-55418523)
[»] chr4 (8 HSPs)
chr4 (21-91)||(5715365-5715435)
chr4 (25-84)||(50935726-50935785)
chr4 (21-83)||(53008339-53008402)
chr4 (25-81)||(50911944-50912000)
chr4 (21-83)||(53011231-53011294)
chr4 (21-66)||(16853976-16854021)
chr4 (162-206)||(50912142-50912186)
chr4 (147-206)||(50935909-50935968)
[»] chr7 (4 HSPs)
chr7 (21-85)||(22582333-22582397)
chr7 (21-86)||(293253-293319)
chr7 (25-71)||(45937914-45937960)
chr7 (21-68)||(297146-297193)
[»] scaffold0038 (1 HSPs)
scaffold0038 (21-90)||(49453-49522)
[»] chr6 (3 HSPs)
chr6 (21-90)||(28249291-28249360)
chr6 (21-83)||(7501366-7501428)
chr6 (21-83)||(31888565-31888627)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 44541421 - 44541235
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaa-caatcattaatcaatatttcagttgatcacaa 119  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||  ||||||| |||||||    
T  44541421 gtttgttagaggagtttgttacaatgtccagttgtatatatactcactcatgtgttgtaaataaaaaacaattattaatcaattgttcagtttatcacaa 44541322  T
Q  120 tttctctgttattttcatcttgctcttaaacagtttatttttataagcactttccgctgcgcatagaacatagcgattattctaaca 206  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  44541321 tttctctgttattttcatcttactcttaaacagcttatttttataagcactttccgctgcgcatagaacatagcgattgttctaaca 44541235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 206 - 311
Target Start/End: Complemental strand, 51740396 - 51740291
Alignment:
Q  206 attctgtagcaatctaacaatttcaatgtcttgagagaagaagaacaagcgttacaaatactataaaccccaacatcactgacattactgcatttgatga 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||  |||    
T  51740396 attctgtagcaatctaacaatttcaatgtcttgagagaagaagaacaagcgttacaaatactagaaaccccaacatcactgacagtactgcatttattga 51740297  T
Q  306 tgtcca 311  Q
    ||||||    
T  51740296 tgtcca 51740291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 295816 - 296000
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaacaatcattaatcaatatttcagttgatcacaat 120  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||    
T  295816 gtttgttagaggagtttgttacaatgtccagttgtatatatactcactcatgtgttgtaaataataacaatcattaatcaatttttcagtttatcataat 295915  T
Q  121 ttctctgttattttcatcttgctcttaaacagtttatttttataagcactttccgctgcgcatagaacatagcgattattctaaca 206  Q
    |||||||||||||||||||||||||||||||  ||| ||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  295916 ttctctgttattttcatcttgctcttaaacaactta-ttttataagcactttccgctgtgcatagaacatagcgattgttctaaca 296000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 21 - 206
Target Start/End: Original strand, 302452 - 302636
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaacaatcattaatcaatatttcagttgatcacaat 120  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||| ||||||||    
T  302452 gtttgttagaggagtttgttacaatgtccagttgtatatatactcact-atgtgttgtaaataataacaatcattaatcaatttttcagtttatcacaat 302550  T
Q  121 ttctctgttattttcatcttgctcttaaacagtttatttttataagcactttccgctgcgcatagaacatagcgattattctaaca 206  Q
    |||||| ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  302551 ttctctattattttcatcttgctcataaacatcttatttttataagcactttccgctgcgcatagaacatagcgattgttctaaca 302636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 45485847 - 45485783
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaa 85  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45485847 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaa 45485783  T

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Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 39190709 - 39190645
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaa 85  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39190709 gtttgttagaggagtttgttacaacgtctagttgtatatatactcactcatgtgttgtaaataaa 39190645  T

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Target: chr2; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 18164005 - 18164067
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18164005 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcaagtgttgtaaata 18164067  T

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Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 21794549 - 21794487
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  21794549 gtttgttagaggagtttgttacaacgtccagttgtatatatacttactcatgtgttataaata 21794487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 43081696 - 43081634
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  43081696 gtttgttataggagtttgttacaacgtccaattgtatatgtactcactcatgtgttgtaaata 43081634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 29960425 - 29960476
Alignment:
Q  33 agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 84  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  29960425 agtttgttacaacgtctagttgtatatatactcacttatgtgttgtaaataa 29960476  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 13273380 - 13273419
Alignment:
Q  44 acgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  13273380 acgtccagttgtatatatattcactcatgtgttgtaaata 13273419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 45497078 - 45497050
Alignment:
Q  57 tatatactcactcatgtgttgtaaataaa 85  Q
    |||||||||||||||||||||||||||||    
T  45497078 tatatactcactcatgtgttgtaaataaa 45497050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 45504820 - 45504792
Alignment:
Q  57 tatatactcactcatgtgttgtaaataaa 85  Q
    |||||||||||||||||||||||||||||    
T  45504820 tatatactcactcatgtgttgtaaataaa 45504792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 21 - 204
Target Start/End: Complemental strand, 37786643 - 37786460
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaacaatcattaatcaatatttcagttgatcacaat 120  Q
    ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||| |||| |||    
T  37786643 gtttgttagaggactttgttacaacgtccagttgtatatatattcactcatgtgttgtaaataataacaatcattaatcaatttttcagtttatcataat 37786544  T
Q  121 ttctctgttattttcatcttgctcttaaacagtttatttttataagcactttccgctgcgcatagaacatagcgattattctaa 204  Q
    |||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  37786543 ttctctgttattttcatcttactcttaaacaacttatttttataagcactttccgctgcgcatagaacataacgattgttctaa 37786460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 21 - 206
Target Start/End: Complemental strand, 37186850 - 37186664
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaacaatcattaatcaatatttcagttgatcacaat 120  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| | ||| ||||  |||||||    
T  37186850 gtttgttagaggagtttgttacaacgtctagttgtatatatactcactcatgtgttgtaaataataacaatcaataatcatttttttagtttttcacaat 37186751  T
Q  121 ttctctgttattttcatcttgctctt-aaacagtttatttttataagcactttccgctgcgcatagaacatagcgattattctaaca 206  Q
    ||||||||||||||||| |||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  37186750 ttctctgttattttcatattgctcttaaaacagcttatttttataagcaccttccgctgcgcatagaacatagcgattgttctaaca 37186664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 55 - 206
Target Start/End: Complemental strand, 37791134 - 37790983
Alignment:
Q  55 tatatatactcactcatgtgttgtaaataaaaacaatcattaatcaatatttcagttgatcacaatttctctgttattttcatcttgctcttaaacagtt 154  Q
    |||||||| ||||| |||||||||| |||| |||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |    
T  37791134 tatatatattcactgatgtgttgtacataataacaattattaatcaatttttcagtttatcacaatttctctgttattttcatcttgctcttaaacagct 37791035  T
Q  155 tatttttataagcactttccgctgcgcatagaacatagcgattattctaaca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  37791034 tatttttataagcactttccgctgcgcatagaacatagcgattgttctaaca 37790983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 11096199 - 11096261
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11096199 gtttgttagaggagtttgttacaacgttcagttgtatatatactcactcatgtgttgtaaata 11096261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 55
Target Start/End: Complemental strand, 37791214 - 37791180
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgt 55  Q
    ||||||||||||||||||||||||||| |||||||    
T  37791214 gtttgttagaggagtttgttacaacgttcagttgt 37791180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 690121 - 690282
Alignment:
Q  33 agtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaacaatcattaatcaatatttcagttgatcacaatttctctgttatt 132  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||| ||||||            | ||||||||||||||||||||    
T  690121 agtttgttacaatgttcagttgtatatatactcactcatgtgttgtaaataataacaattattaat------------ttatcacaatttctctgttatt 690208  T
Q  133 ttcatcttgctcttaaacagtttatttttataagcactttccgctgcgcatagaacatagcgattattctaaca 206  Q
    |||||||| || |||||||  |||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  690209 ttcatcttacttttaaacaacttatatttataagcactttccgctgcgcatagaacatagcgattgttctaaca 690282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 32090278 - 32090341
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32090278 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 32090341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 9503723 - 9503785
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  9503723 gtttgttagaggagtttgttacaacgtccagttatatatatactcactcatgtgttgtaaata 9503785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 3627562 - 3627626
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaa 85  Q
    |||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3627562 gtttattagagaagtttgttacaacgtccagatgtatatatactcactcatgtgttgtaaataaa 3627626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 9507705 - 9507767
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    |||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  9507705 gtttgttaaaggagtttgttacaacgtccagttatatatatacccactcatgtgttgtaaata 9507767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 34854126 - 34854194
Alignment:
Q  22 tttgttagaggagtttgttacaacgtccagt-----tgtatatatactcactcatgtgttgtaaataaa 85  Q
    |||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  34854126 tttgttagaggagtttgttacaacgtccagttcagttgtatatatactcactcatgtgttgtaaataaa 34854194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 204
Target Start/End: Complemental strand, 41925209 - 41925118
Alignment:
Q  113 atcacaatttctctgttattttcatcttgctcttaaacagtttatttttataagcactttccgctgcgcatagaacatagcgattattctaa 204  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41925209 atcacaatttctctgttattttcatcttgctcttaaacaacttatttttataagcactttccgctgcgcatagaacatagcgattgttctaa 41925118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 103
Target Start/End: Complemental strand, 28920332 - 28920250
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaacaatcattaatcaata 103  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||    
T  28920332 gtttattagaggagtttgttataacgtccagttgtatatatactcactcatatgttgtaaataataacaatcattgatcaata 28920250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 531589 - 531527
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  531589 gttttttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 531527  T

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Target: chr3; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 4315634 - 4315685
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatg 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4315634 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatg 4315685  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 47743890 - 47743953
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 84  Q
    |||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||    
T  47743890 gtttgttacaggagtttgttacaacgtctagttgtaaatatattcactcatgtgttgtaaataa 47743953  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 32813660 - 32813696
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtat 57  Q
    |||||||||||||||||||||||||||||||||||||    
T  32813660 gtttgttagaggagtttgttacaacgtccagttgtat 32813696  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 55418479 - 55418523
Alignment:
Q  39 ttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  55418479 ttacaacttccagttgtatatatactcactcatgtattgtaaata 55418523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 5715365 - 5715435
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaacaat 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5715365 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaatcaat 5715435  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 50935726 - 50935785
Alignment:
Q  25 gttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataa 84  Q
    ||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  50935726 gttagaggagtttgttacaacatctagttgtatatatactcactcatgtgttgtaaataa 50935785  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 53008339 - 53008402
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcac-tcatgtgttgtaaata 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  53008339 gtttgttagaggagtttgttacaacgtccagttgtatatatactcacttcctgtgttgtaaata 53008402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 50911944 - 50912000
Alignment:
Q  25 gttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaa 81  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  50911944 gttagaggagtttgttacaacacccagttgtatatatactcactcatgtgttgtaaa 50912000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 53011231 - 53011294
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcac-tcatgtgttgtaaata 83  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||| || |||||||||||||    
T  53011231 gtttgttagaggattttgttaaaacgtccagttgtatatatactcacttcctgtgttgtaaata 53011294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 16854021 - 16853976
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactca 66  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  16854021 gtttgttagaggaatttgttacaacgtccagttgtatatatactca 16853976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 50912142 - 50912186
Alignment:
Q  162 ataagcactttccgctgcgcatagaacatagcgattattctaaca 206  Q
    |||||||||||||| |||||||||||||||| |||| ||||||||    
T  50912142 ataagcactttccgttgcgcatagaacatagtgattgttctaaca 50912186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 50935909 - 50935968
Alignment:
Q  147 aaacagtttatttttataagcactttccgctgcgcatagaacatagcgattattctaaca 206  Q
    |||||| ||||||  ||||||||||||| ||||||||| ||||||| |||| ||||||||    
T  50935909 aaacagcttatttccataagcactttccactgcgcatataacatagtgattgttctaaca 50935968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 22582397 - 22582333
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaa 85  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  22582397 gtttgttagaggagtttggtacaacgtccagttgtatatatactcactcatgtgttgtaaataaa 22582333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 293253 - 293319
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtg-ttgtaaataaaa 86  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||||| || ||||||||||||    
T  293253 gtttgttagaggggtttgttacaacgtctagttgtatatatactcactcatatgtttgtaaataaaa 293319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 45937914 - 45937960
Alignment:
Q  25 gttagaggagtttgttacaacgtccagttgtatatatactcactcat 71  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  45937914 gttagaggagtttgttacaacgtccagttgtatatatactcactcat 45937960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 297146 - 297193
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcact 68  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  297146 gtttgttagaggagtttgttacaacgtctagttgtatatatactcact 297193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 49453 - 49522
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaacaa 90  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  49453 gtttgttagagaagtttgttacaacgtctagttgtatatatactcactcatgtgttgtaaataataacaa 49522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 90
Target Start/End: Original strand, 28249291 - 28249360
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaataaaaacaa 90  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  28249291 gtttgttagagaagtttgttacaacgtctagttgtatatatactcactcatgtgttgtaaataataacaa 28249360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 7501428 - 7501366
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  7501428 gtttgttagaggagtttgttacaacgcccagttgtttatatactcactcatgtgttgtaaata 7501366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 31888565 - 31888627
Alignment:
Q  21 gtttgttagaggagtttgttacaacgtccagttgtatatatactcactcatgtgttgtaaata 83  Q
    ||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  31888565 gtttgttagagaagtttgttacaacgtgcaattgtatatatactcactcatgtgttgtaaata 31888627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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